DC887562

Overview
NameDC887562
Unique NameDC887562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6280 contig Csv1_Contig6280:376..1031. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_TOBAC (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum GN=RPL3 PE=1 SV=1)

HSP 1 Score: 323.553 bits (828), Expect = 5.800e-88
Identity = 153/181 (84.53%), Postives = 171/181 (94.48%), Query Frame = -2
Query:  101 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 643
            ++KTEATDGY+AVQ+GY RVRD+KLTKPE+GHL+KSG+IP+RHLQEFRLQS+DGFE  QKL F E+F EGDLVDVSGTTIGKGFQGGIKRHNF+RG MTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGT RKIRKLKIVKID+ L ++MIKGA+PGKPGNLLR+APAKIVGKNIPK+
Sbjct:   79 QIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIKGALPGKPGNLLRIAPAKIVGKNIPKS 259          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3A_ARATH (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana GN=RPL3A PE=1 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.746e-84
Identity = 150/181 (82.87%), Postives = 164/181 (90.61%), Query Frame = -2
Query:  101 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 643
            ++KT ATDGYDAVQIGY RVRDKKLTKPE GHLQK+G IPMRHLQEFRL +++GFE  QKL F+EIF EGDLVDV+GTTIGKGFQGGIKRH+F+RG MTHGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGT  KIRKLKIVK+D +L VVMIKGA+PGKPGNLLR+ PAKIVG NIPKN
Sbjct:   91 QIKTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CYAP7 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 7424) GN=rplC PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.667e-58
Identity = 106/176 (60.23%), Postives = 138/176 (78.41%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT ATDGY+++QIGYG V++K L KP+LGHL+KS   P+RHL+E+RL++   ++ G  +  + +F  GDLVDV+G TIG+GF G  KRHNF+RG+MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGT   IRKL +V+ID +  +++IKGAVPGKPGNLL + PAK VGK
Sbjct:   38 QVKTPATDGYNSIQIGYGEVKEKALNKPKLGHLKKSASTPVRHLKEYRLENAADYQLGDGIKVD-LFKPGDLVDVAGKTIGRGFAGYQKRHNFKRGSMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTQVTIRKLTVVQIDTERNLILIKGAVPGKPGNLLSITPAKTVGK 212          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNP2 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplC PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.255e-58
Identity = 105/176 (59.66%), Postives = 136/176 (77.27%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT  TDGY +VQIGYG V++K LTKP+LGHL+K+   P+RHL+E+RL  V G+E GQ +    IF  G +VDVSG TIG+GF G  KRHNF+RG MTHGSK+HR  GS GAGTTPGRVY GK+M GR GGT   +RKL++V++D +  +++IKGA+PGK GNLL +AP+ IVG+
Sbjct:   38 QIKTSETDGYTSVQIGYGDVKEKNLTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAIT-ANIFEAGQVVDVSGNTIGRGFAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVVRVDEEKNLLLIKGAIPGKAGNLLSIAPSNIVGQ 212          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ACAM1 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) GN=rplC PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.169e-58
Identity = 105/177 (59.32%), Postives = 137/177 (77.40%), Query Frame = -2
Query:  113 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKN 643
            ++KT  TDGY A+QIGYG   +K LT+PELGHL+KSG  P+RHLQE+RL  V  +E GQ ++  ++F+EG LVD+SGT+IG+GF G  KRHNFRRG M HGSK+HR  GS GAGTTPGR+Y GK+M G+MG   + IRKL +V++D +  V++IKG+VPGKPG LL + PA IVG++
Sbjct:   37 QIKTAQTDGYTAIQIGYGSTTEKALTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQSIS-ADLFSEGQLVDISGTSIGRGFAGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVRVDAERNVLLIKGSVPGKPGALLNIQPATIVGES 212          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_MICAN (50S ribosomal protein L3 OS=Microcystis aeruginosa (strain NIES-843) GN=rplC PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.628e-56
Identity = 103/176 (58.52%), Postives = 135/176 (76.70%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT+ TDGY+++Q+GY  V++K L KP LGHL K+G+ P+RHL E+RL+    +  GQ++   +IF EGDLVDV+GTTIG+GF G  KRHNF+RG MTHGSK+HR  GS GAGTTPGRV+ GK+M G+ G T   IRKL +VKID++  +++IKGAVPGKPG LL + PAK  GK
Sbjct:   38 QVKTKKTDGYESIQVGYKTVKEKALNKPLLGHLAKAGVSPLRHLIEYRLEDASAYTLGQEIT-ADIFQEGDLVDVAGTTIGRGFSGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVFPGKRMAGQYGSTQVTIRKLSVVKIDSERNLILIKGAVPGKPGTLLNITPAKKFGK 212          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_THEEB (50S ribosomal protein L3 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplC PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.703e-55
Identity = 100/176 (56.82%), Postives = 134/176 (76.14%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT  TDGY A+Q+ YG VR+K L++PE GHL KS   PMRHL+EFRL+ V  ++ GQ +  + IF+ G LVDV GT+IG+GF G  KRHNF+RG M HGSK+HR  GS GAGTTPGRV+ GK+M GRMG T   IRKL+++++D +  +++IKGA+PGKPG L+ + PAK+VG+
Sbjct:   37 QIKTPQTDGYTAIQVAYGEVREKNLSRPERGHLNKSQTPPMRHLREFRLEDVSAYQLGQAITVD-IFSPGQLVDVRGTSIGRGFAGYQKRHNFKRGPMAHGSKNHRLPGSTGAGTTPGRVFPGKRMAGRMGNTAVTIRKLQVMRVDPERNLILIKGALPGKPGALVSITPAKVVGR 211          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CYAA5 (50S ribosomal protein L3 OS=Cyanothece sp. (strain ATCC 51142) GN=rplC PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.196e-54
Identity = 100/176 (56.82%), Postives = 132/176 (75.00%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT  TDGY A+QIGY  V++K LTKPELGHL+K    P+RHL+E+R+     +  G+ +   +IFN GDLVD++GT++G+GF G  KRHNF+RG+MTHGSK+HR  GS GAGTTPGRVY GKKM G+ G      R L++V++D +  +++IKGAVPGKPG LL + PAKIVGK
Sbjct:   38 QIKTAETDGYSAIQIGYLEVKEKALTKPELGHLKKVEASPLRHLKEYRVDDTATYTLGEAVK-ADIFNAGDLVDIAGTSMGRGFAGYQKRHNFKRGSMTHGSKNHRLPGSTGAGTTPGRVYPGKKMAGQYGAVKTTTRHLQVVRVDAERNLLLIKGAVPGKPGGLLNITPAKIVGK 212          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CYAP8 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 8801) GN=rplC PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.719e-53
Identity = 98/176 (55.68%), Postives = 130/176 (73.86%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT  TDGY A+Q+GY  V++K LTK E+GHL+K    P+RHL+E+RL     ++ G  +   +IFN GDLVDVSG ++G+GF G  KRHNF+RG MTHGSK+HR  GS GAGTTPGRVY GK+M G+ G T   IR L +V++D+D  ++++KGA+PGKPG LL + PAK VGK
Sbjct:   38 QVKTPDTDGYTAIQVGYHEVKEKALTKAEIGHLKKIDAPPLRHLKEYRLDDSSQYQLGDAIK-ADIFNPGDLVDVSGKSMGRGFAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQYGATQVTIRHLTVVRVDSDRNLILVKGAIPGKPGTLLNITPAKTVGK 212          
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNP6 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplC PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.033e-52
Identity = 100/176 (56.82%), Postives = 128/176 (72.73%), Query Frame = -2
Query:  116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643
            ++KT ATDGY+A+QIG+  VR+K+L+KPELGHL K+G  P+RHL E+R+ S DG E GQ L  +  F  G  VDV G TIG+GF G  KRH F RG M+HGSK+HR  GS GAGTTPGRVY GK+M GR G     IR L +V++D D  ++++KG+VPGKPG LL + PA +VG+
Sbjct:   37 QIKTVATDGYNAIQIGFLEVREKQLSKPELGHLSKAGAPPLRHLLEYRVPSTDGLELGQALTADR-FEAGQKVDVQGHTIGRGFTGYQKRHGFARGPMSHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRSGNDKTTIRGLTVVRVDADRNLLLVKGSVPGKPGALLNITPATVVGQ 211          
The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK3_TOBAC5.800e-8884.5350S ribosomal protein L3, chloroplastic (Fragment)... [more]
RK3A_ARATH1.746e-8482.8750S ribosomal protein L3-1, chloroplastic OS=Arabi... [more]
RL3_CYAP73.667e-5860.2350S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RL3_SYNP26.255e-5859.6650S ribosomal protein L3 OS=Synechococcus sp. (str... [more]
RL3_ACAM18.169e-5859.3250S ribosomal protein L3 OS=Acaryochloris marina (... [more]
RL3_MICAN2.628e-5658.5250S ribosomal protein L3 OS=Microcystis aeruginosa... [more]
RL3_THEEB1.703e-5556.8250S ribosomal protein L3 OS=Thermosynechococcus el... [more]
RL3_CYAA54.196e-5456.8250S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RL3_CYAP82.719e-5355.6850S ribosomal protein L3 OS=Cyanothece sp. (strain... [more]
RL3_SYNP61.033e-5256.8250S ribosomal protein L3 OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionDC887562 EIC Citrus sinensis cDNA clone EIC0561 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bp
CGAGCTNATTGCCCTCACAAAACGAAGGGTTACAAAGACTAATCTCTTTG
ACAATGTAGAACCGAACAAAGCGAAGTAATCAGAATAATGCACCAACCTA
GTTCTTTGGTATGTTCTTCCCAACAATCTTAGCTGGTGCTACACGCAGAA
GATTTCCGGGCTTACCAGGGACAGCACCCTTTATCATTACAACACGAAGG
TCATTATCAATTTTTACAATCTTGAGCTTTCTGATCTTCCTTGTTGTCCC
TCCCATTCTTCCAGGCATCTTCTTCCCCTTGTATACACGGCCTGGAGTTG
TTCCAGCACCAATGGAACCCAATTGTCTATGACTCTTAGAACCATGGGTC
ATCGCACCCCTTCTGAAATTGTGCCGCTTAATGCCACCTTGAAAACCCTT
GCCGATAGTAGTCCCAGAAACATCGACAAGATCCCCTTCATTAAAAATCT
CTTCAAAAGCCAACTTTTGGCCAGCCTCAAACCCATCAACAGACTGTAAC
CTAAACTCCTGCAAATGCCTCATGGGTATTAACCCAGACTTTTGCAAGTG
ACCCAGCTCAGGTTTCGTCAGCTTCTTGTCCCTCACTCTCCCATAACCAA
TCTGAACGGCGTCGTACCCGTCAGTGGCTTCAGTCTTTAACCTGGGTCAC
AATGTT
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