DC887562
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3_TOBAC (50S ribosomal protein L3, chloroplastic (Fragment) OS=Nicotiana tabacum GN=RPL3 PE=1 SV=1) HSP 1 Score: 323.553 bits (828), Expect = 5.800e-88 Identity = 153/181 (84.53%), Postives = 171/181 (94.48%), Query Frame = -2 Query: 101 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 643 ++KTEATDGY+AVQ+GY RVRD+KLTKPE+GHL+KSG+IP+RHLQEFRLQS+DGFE QKL F E+F EGDLVDVSGTTIGKGFQGGIKRHNF+RG MTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGT RKIRKLKIVKID+ L ++MIKGA+PGKPGNLLR+APAKIVGKNIPK+ Sbjct: 79 QIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDDQLNIIMIKGALPGKPGNLLRIAPAKIVGKNIPKS 259
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RK3A_ARATH (50S ribosomal protein L3-1, chloroplastic OS=Arabidopsis thaliana GN=RPL3A PE=1 SV=1) HSP 1 Score: 311.997 bits (798), Expect = 1.746e-84 Identity = 150/181 (82.87%), Postives = 164/181 (90.61%), Query Frame = -2 Query: 101 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKNIPKN 643 ++KT ATDGYDAVQIGY RVRDKKLTKPE GHLQK+G IPMRHLQEFRL +++GFE QKL F+EIF EGDLVDV+GTTIGKGFQGGIKRH+F+RG MTHGSKSHR LGSIGAGTTPGRVYKGKKMPGRMGGT KIRKLKIVK+D +L VVMIKGA+PGKPGNLLR+ PAKIVG NIPKN Sbjct: 91 QIKTLATDGYDAVQIGYRRVRDKKLTKPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLRITPAKIVGVNIPKN 271
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CYAP7 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 7424) GN=rplC PE=3 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 3.667e-58 Identity = 106/176 (60.23%), Postives = 138/176 (78.41%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT ATDGY+++QIGYG V++K L KP+LGHL+KS P+RHL+E+RL++ ++ G + + +F GDLVDV+G TIG+GF G KRHNF+RG+MTHGSK+HR GS GAGTTPGRVY GK+M GR GGT IRKL +V+ID + +++IKGAVPGKPGNLL + PAK VGK Sbjct: 38 QVKTPATDGYNSIQIGYGEVKEKALNKPKLGHLKKSASTPVRHLKEYRLENAADYQLGDGIKVD-LFKPGDLVDVAGKTIGRGFAGYQKRHNFKRGSMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTQVTIRKLTVVQIDTERNLILIKGAVPGKPGNLLSITPAKTVGK 212
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNP2 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplC PE=3 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 6.255e-58 Identity = 105/176 (59.66%), Postives = 136/176 (77.27%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT TDGY +VQIGYG V++K LTKP+LGHL+K+ P+RHL+E+RL V G+E GQ + IF G +VDVSG TIG+GF G KRHNF+RG MTHGSK+HR GS GAGTTPGRVY GK+M GR GGT +RKL++V++D + +++IKGA+PGK GNLL +AP+ IVG+ Sbjct: 38 QIKTSETDGYTSVQIGYGDVKEKNLTKPQLGHLKKADAAPLRHLKEYRLDDVSGYELGQAIT-ANIFEAGQVVDVSGNTIGRGFAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRYGGTKITVRKLEVVRVDEEKNLLLIKGAIPGKAGNLLSIAPSNIVGQ 212
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_ACAM1 (50S ribosomal protein L3 OS=Acaryochloris marina (strain MBIC 11017) GN=rplC PE=3 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 8.169e-58 Identity = 105/177 (59.32%), Postives = 137/177 (77.40%), Query Frame = -2 Query: 113 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGKN 643 ++KT TDGY A+QIGYG +K LT+PELGHL+KSG P+RHLQE+RL V +E GQ ++ ++F+EG LVD+SGT+IG+GF G KRHNFRRG M HGSK+HR GS GAGTTPGR+Y GK+M G+MG + IRKL +V++D + V++IKG+VPGKPG LL + PA IVG++ Sbjct: 37 QIKTAQTDGYTAIQIGYGSTTEKALTRPELGHLKKSGSTPVRHLQEYRLADVSEYELGQSIS-ADLFSEGQLVDISGTSIGRGFAGYQKRHNFRRGPMGHGSKNHRAPGSTGAGTTPGRIYPGKRMAGQMGNVKKTIRKLTVVRVDAERNVLLIKGSVPGKPGALLNIQPATIVGES 212
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_MICAN (50S ribosomal protein L3 OS=Microcystis aeruginosa (strain NIES-843) GN=rplC PE=3 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 2.628e-56 Identity = 103/176 (58.52%), Postives = 135/176 (76.70%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT+ TDGY+++Q+GY V++K L KP LGHL K+G+ P+RHL E+RL+ + GQ++ +IF EGDLVDV+GTTIG+GF G KRHNF+RG MTHGSK+HR GS GAGTTPGRV+ GK+M G+ G T IRKL +VKID++ +++IKGAVPGKPG LL + PAK GK Sbjct: 38 QVKTKKTDGYESIQVGYKTVKEKALNKPLLGHLAKAGVSPLRHLIEYRLEDASAYTLGQEIT-ADIFQEGDLVDVAGTTIGRGFSGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVFPGKRMAGQYGSTQVTIRKLSVVKIDSERNLILIKGAVPGKPGTLLNITPAKKFGK 212
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_THEEB (50S ribosomal protein L3 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplC PE=3 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 1.703e-55 Identity = 100/176 (56.82%), Postives = 134/176 (76.14%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT TDGY A+Q+ YG VR+K L++PE GHL KS PMRHL+EFRL+ V ++ GQ + + IF+ G LVDV GT+IG+GF G KRHNF+RG M HGSK+HR GS GAGTTPGRV+ GK+M GRMG T IRKL+++++D + +++IKGA+PGKPG L+ + PAK+VG+ Sbjct: 37 QIKTPQTDGYTAIQVAYGEVREKNLSRPERGHLNKSQTPPMRHLREFRLEDVSAYQLGQAITVD-IFSPGQLVDVRGTSIGRGFAGYQKRHNFKRGPMAHGSKNHRLPGSTGAGTTPGRVFPGKRMAGRMGNTAVTIRKLQVMRVDPERNLILIKGALPGKPGALVSITPAKVVGR 211
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CYAA5 (50S ribosomal protein L3 OS=Cyanothece sp. (strain ATCC 51142) GN=rplC PE=3 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 4.196e-54 Identity = 100/176 (56.82%), Postives = 132/176 (75.00%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT TDGY A+QIGY V++K LTKPELGHL+K P+RHL+E+R+ + G+ + +IFN GDLVD++GT++G+GF G KRHNF+RG+MTHGSK+HR GS GAGTTPGRVY GKKM G+ G R L++V++D + +++IKGAVPGKPG LL + PAKIVGK Sbjct: 38 QIKTAETDGYSAIQIGYLEVKEKALTKPELGHLKKVEASPLRHLKEYRVDDTATYTLGEAVK-ADIFNAGDLVDIAGTSMGRGFAGYQKRHNFKRGSMTHGSKNHRLPGSTGAGTTPGRVYPGKKMAGQYGAVKTTTRHLQVVRVDAERNLLLIKGAVPGKPGGLLNITPAKIVGK 212
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_CYAP8 (50S ribosomal protein L3 OS=Cyanothece sp. (strain PCC 8801) GN=rplC PE=3 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 2.719e-53 Identity = 98/176 (55.68%), Postives = 130/176 (73.86%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT TDGY A+Q+GY V++K LTK E+GHL+K P+RHL+E+RL ++ G + +IFN GDLVDVSG ++G+GF G KRHNF+RG MTHGSK+HR GS GAGTTPGRVY GK+M G+ G T IR L +V++D+D ++++KGA+PGKPG LL + PAK VGK Sbjct: 38 QVKTPDTDGYTAIQVGYHEVKEKALTKAEIGHLKKIDAPPLRHLKEYRLDDSSQYQLGDAIK-ADIFNPGDLVDVSGKSMGRGFAGYQKRHNFKRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQYGATQVTIRHLTVVRVDSDRNLILVKGAIPGKPGTLLNITPAKTVGK 212
BLAST of DC887562 vs. ExPASy Swiss-Prot
Match: RL3_SYNP6 (50S ribosomal protein L3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplC PE=3 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.033e-52 Identity = 100/176 (56.82%), Postives = 128/176 (72.73%), Query Frame = -2 Query: 116 RLKTEATDGYDAVQIGYGRVRDKKLTKPELGHLQKSGLIPMRHLQEFRLQSVDGFEAGQKLAFEEIFNEGDLVDVSGTTIGKGFQGGIKRHNFRRGAMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTTRKIRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRVAPAKIVGK 643 ++KT ATDGY+A+QIG+ VR+K+L+KPELGHL K+G P+RHL E+R+ S DG E GQ L + F G VDV G TIG+GF G KRH F RG M+HGSK+HR GS GAGTTPGRVY GK+M GR G IR L +V++D D ++++KG+VPGKPG LL + PA +VG+ Sbjct: 37 QIKTVATDGYNAIQIGFLEVREKQLSKPELGHLSKAGAPPLRHLLEYRVPSTDGLELGQALTADR-FEAGQKVDVQGHTIGRGFTGYQKRHGFARGPMSHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRSGNDKTTIRGLTVVRVDADRNLLLVKGSVPGKPGALLNITPATVVGQ 211 The following BLAST results are available for this feature:
BLAST of DC887562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887562 ID=DC887562; Name=DC887562; organism=Citrus sinensis; type=EST; length=656bpback to top |