CN184870

Overview
NameCN184870
Unique NameCN184870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9531 contig Csv1_Contig9531:9..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.559e-61
Identity = 119/172 (69.19%), Postives = 132/172 (76.74%), Query Frame = 2
Query:   26 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVP----TTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 529
            MS+ + I LKS DGE+FE++EAVALES TIKHMIEDDC DNGIPLPNVT KIL+KV+EYCK+HVE      TT D                +EDLK+WD++F+KVDQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP         NQWAFE
Sbjct:    1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATTTTTVASGSS-DEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 171          
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.236e-59
Identity = 115/166 (69.28%), Postives = 127/166 (76.51%), Query Frame = 2
Query:   32 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 529
            S K IVLKS DGESFEVEEAVALES TI HM+EDDC DNG+PLPNVT KILAKV+EYCK+HVE   ++                 ++DLK+WD DF+K+DQATLF+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNIKNDFTP         NQWAFE
Sbjct:    2 SAKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASK-------AEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160          
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: ASK4_ARATH (SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.166e-55
Identity = 106/164 (64.63%), Postives = 123/164 (75.00%), Query Frame = 2
Query:   38 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 529
            KMI+LKS DGESFE+EEAVA++S TIKHMIEDDCADNGIPLPNVTG ILAKV+EYCKKHVE                       ++LK+WD++FVKVDQ TLFDLILAANYLNI GLLDLTC+ VAD ++GKTPE++R  FNIKND+TP         N+WAFE
Sbjct:    6 KMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAE------NDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNIKNDYTPEEEAEVRNENKWAFE 163          
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: ASK3_ARATH (SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.949e-53
Identity = 104/164 (63.41%), Postives = 118/164 (71.95%), Query Frame = 2
Query:   38 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 529
            KMI+LKS DGESFEVEEAVA+ES TIKHMIEDDC DNGIPLPNVTG ILAKV+EYCKKHVE                        +LK+WD DFVKVD  TLFDL+ AANYLNI GLLDLTC+ VAD ++GKTP ++R+ FNIKND+TP         N+WAFE
Sbjct:    6 KMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAA------EAGGDKDFYGSTENHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNIKNDYTPEEEAEVRNENRWAFE 163          
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: ASK11_ARATH (SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.789e-50
Identity = 102/166 (61.45%), Postives = 116/166 (69.88%), Query Frame = 2
Query:   32 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 529
            S KMIVL S DG+SFEVEEAVA++S TI HM+EDDC  +GIPL NV  KIL KV+EYCKKH                        EEDL +WD  F+ ++Q+T+F+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKH---------------HVDEANPISEEDLNNWDEKFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: ASK12_ARATH (SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.978e-49
Identity = 102/167 (61.08%), Postives = 116/167 (69.46%), Query Frame = 2
Query:   32 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKK-HVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 529
            S KMIVL S DG+SFEVEEAVA++S TI HM+EDDC  +GIPL NV  KIL KV+EYCKK HV+                      EEDL  WD  F+ ++Q+T+F+LILAANYLNIK L DLTCQTVADMIKGKTPEEIR TFNI+NDFTP         NQWAFE
Sbjct:    2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEANP----------------ISEEDLNKWDEKFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEEEAVRKENQWAFE 152          
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: ASK13_ARATH (SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.584e-45
Identity = 94/168 (55.95%), Postives = 115/168 (68.45%), Query Frame = 2
Query:   38 KMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHV--EVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKV--DQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 529
            KM++L S DGESF+VEEAVA++S TI HMIEDDC  NG+P+ NVTG IL+KV+EYCKKHV  + PT +                 +++LK WD +F+K     +TLFD++LAANYLNIK LLDL CQTVADMI GK P+EIR    I+NDFTP         NQWAFE
Sbjct:    3 KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEES----------------KDELKKWDAEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTPEEEEEIRKENQWAFE 154          
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: ASK10_ARATH (SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.718e-43
Identity = 91/166 (54.82%), Postives = 103/166 (62.05%), Query Frame = 2
Query:   32 SPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 529
            S K I+LKS DG SFEVEE  A +  TI HM EDDC DNGIPLP VTGKIL  V+EYC KH                        +EDLK WD +F++  Q+T+FDLI+AANYLNIK LLDL CQTVADMIK  T E  RK FNI+ND+T          NQW FE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKH---------------HVDAANPCSDEDLKKWDKEFMEKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAVRRENQWGFE 152          
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: ASK9_ARATH (SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.051e-42
Identity = 90/167 (53.89%), Postives = 107/167 (64.07%), Query Frame = 2
Query:   32 SPKMIVLKSCDGESFEVEEAVALE-STTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVKVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 529
            S K I+LKS DG SFEVEE  A +    I HM E+DC DNGIPLPNVTGKILA V+EYC KH                        ++DLK WD +F++ D +T+FDLI AANYLNIK L DL CQTVA++IKG TPE+IR+ FNI+ND TP         N+WAFE
Sbjct:    2 STKKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKH---------------HVDAANPCSDDDLKKWDKEFMEKDTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENKWAFE 153          
BLAST of CN184870 vs. ExPASy Swiss-Prot
Match: ASK14_ARATH (SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.342e-42
Identity = 96/169 (56.80%), Postives = 111/169 (65.68%), Query Frame = 2
Query:   26 MSSPKMIVLKSCDGESFEVEEAVALESTTIKHMIEDDCADNGIPLPNVTGKILAKVVEYCKKHVEVPTTQDXXXXXXXXXXXXXXXXEEDLKSWDTDFVK-VDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXXNQWAFE 529
            MSS K IVL S DGESFEVEEAVA +   ++HMIEDDC    +PL NVTGKIL+ VVEYCKKHV                        ++ K+WD +F+K  DQ T+F L+LAANYLNIKGLLDL+ QTVAD IK KTPEEIR+ FNI+NDFTP         N WAFE
Sbjct:    1 MSSNK-IVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHV-------------------VDEESDEFKTWDEEFMKKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAAVRKENAWAFE 149          
The following BLAST results are available for this feature:
BLAST of CN184870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SKP1B_ARATH8.559e-6169.19SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH1.236e-5969.28SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
ASK4_ARATH9.166e-5564.63SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK... [more]
ASK3_ARATH2.949e-5363.41SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK... [more]
ASK11_ARATH1.789e-5061.45SKP1-like protein 11 OS=Arabidopsis thaliana GN=AS... [more]
ASK12_ARATH1.978e-4961.08SKP1-like protein 12 OS=Arabidopsis thaliana GN=AS... [more]
ASK13_ARATH6.584e-4555.95SKP1-like protein 13 OS=Arabidopsis thaliana GN=AS... [more]
ASK10_ARATH4.718e-4354.82SKP1-like protein 10 OS=Arabidopsis thaliana GN=AS... [more]
ASK9_ARATH1.051e-4253.89SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK... [more]
ASK14_ARATH2.342e-4256.80SKP1-like protein 14 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006E05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184870 ID=CN184870; Name=CN184870; organism=Citrus sinensis; type=EST; length=802bp
GAGGGTTTTCTTTTTTCTCGAAACGATGTCGTCTCCTAAGATGATCGTAC
TCAAGAGCTGTGACGGCGAGTCTTTCGAGGTCGAGGAGGCTGTCGCGCTT
GAGTCGACGACCATCAAGCACATGATCGAGGACGACTGCGCCGATAACGG
CATCCCGTTACCGAACGTGACGGGCAAGATCCTGGCGAAGGTGGTTGAGT
ATTGCAAGAAACACGTGGAGGTTCCTACGACCCAGGATAGCAACACCAGC
GGCGCCAACAGCAACGGTGCTGCCACTAACGGTGGTGAGGAGGATCTCAA
AAGCTGGGACACTGACTTCGTCAAAGTTGACCAGGCCACTCTCTTCGATC
TCATCCTGGCTGCAAACTACCTGAACATCAAGGGGCTGCTGGACCTTACC
TGCCAGACTGTTGCTGACATGATCAAGGGAAAGACTCCGGAGGAGATTCG
AAAGACCTTTAACATCAAGAATGACTTCACTCCAGAGGAGGAAGAAGAGG
TCCGTAGGGAGAACCAGTGGGCTTTTGAGTGAAAGTTGTTTCAACAAAGA
CAATTTGTCATTATCATTGTCTTGCAATCTTGCTGTCTTTAACATGTAGA
TGTAGTTTTTTAGGGCTTATCTTTTCCTTTCTCATTGTACTTTCGAACTT
ATTAGCTGTTTGAAATGTAAATAATAGTCGGTTCTGGTGGAACTGGTAGC
AGTTGGTCTGGTCCATCCTTTCCTGCTTGCTATCAAGACCGTTGGATCAT
TGAATTTGACTAATTCCTTTTGGTTCAATGCATGTTATTTTGGCGTGTGA
AC
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