CN184824
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN184824 vs. ExPASy Swiss-Prot
Match: PGLR4_ARATH (Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 3.054e-40 Identity = 65/101 (64.36%), Postives = 74/101 (73.27%), Query Frame = 2 Query: 359 CIFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKG 661 C+FDV +GAVGDGS VE+GVVLAP VFKITSTIFSGPCKP LVFQLDGVLMPPDGP+ WP+ D++ QWLVFY+LD TF+GKG Sbjct: 78 CVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFKITSTIFSGPCKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKG 178 HSP 2 Score: 45.4394 bits (106), Expect = 3.054e-40 Identity = 16/17 (94.12%), Postives = 16/17 (94.12%), Query Frame = 1 Query: 670 EGNGQPWWDLPCKPHRG 720 EGNGQ WWDLPCKPHRG Sbjct: 181 EGNGQKWWDLPCKPHRG 197
BLAST of CN184824 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 3.379e-11 Identity = 32/100 (32.00%), Postives = 48/100 (48.00%), Query Frame = 2 Query: 362 IFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKG 661 +F+V YGAVGDG + V+L P++ F + + +F GPC+P L F++DG ++ P W + K WL F +L D G G Sbjct: 58 VFNVEQYGAVGDGKHDSTEAFATTWNAACKKASAVLLVPANKKFFVNNLVFRGPCQPHLSFKVDGTIVAQPDPARWKNS---KIWLQFAQLTDFNLMGTG 154 HSP 2 Score: 23.0978 bits (48), Expect = 3.379e-11 Identity = 8/17 (47.06%), Postives = 9/17 (52.94%), Query Frame = 1 Query: 670 EGNGQPWWDLPCKPHRG 720 +G GQ WW CK G Sbjct: 157 DGQGQQWWAGQCKVVNG 173
BLAST of CN184824 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 7.388e-11 Identity = 32/100 (32.00%), Postives = 48/100 (48.00%), Query Frame = 2 Query: 362 IFDVRDYGAVGDGSXXXXXXXXXXXXXXXXVEAGVVLAPSDYVFKITSTIFSGPCKPRLVFQLDGVLMPPDGPDTWPKADSRKQWLVFYKLDDMTFTGKG 661 IF+V YGAVGDG + ++L P + F + + F+GPC+P F++DG++ P +W + + WL F KL T GKG Sbjct: 58 IFNVEKYGAVGDGKHDCTEAFSTAWQAACKKPSAMLLVPGNKKFVVNNLFFNGPCQPHFTFKVDGIIAAYQNPASW---KNNRIWLQFAKLTGFTLMGKG 154 HSP 2 Score: 21.1718 bits (43), Expect = 7.388e-11 Identity = 6/13 (46.15%), Postives = 8/13 (61.54%), Query Frame = 1 Query: 670 EGNGQPWWDLPCK 708 +G G+ WW CK Sbjct: 157 DGQGKQWWAGQCK 169 The following BLAST results are available for this feature:
BLAST of CN184824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN184824 ID=CN184824; Name=CN184824; organism=Citrus sinensis; type=EST; length=720bpback to top |