CN184781
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_PONAB (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 2.137e-30 Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 2 Query: 377 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 613 NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_MOUSE (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 2.137e-30 Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 2 Query: 377 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 613 NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_HUMAN (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 2.137e-30 Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 2 Query: 377 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 613 NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_BOVIN (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3) HSP 1 Score: 132.88 bits (333), Expect = 2.137e-30 Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 2 Query: 377 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 613 NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_DICDI (Probable U6 snRNA-associated Sm-like protein LSm5 OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 4.612e-25 Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 2 Query: 383 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 613 SQLLP ELI++CIGS+IW+ MK DKE VGTL GFD YVN+ L+DVTEYE T EG + KLD ILLNGN++ +LVPGG Sbjct: 14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKLDNILLNGNHVCLLVPGG 90
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_SCHPO (U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces pombe GN=lsm5 PE=2 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 3.201e-18 Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 2 Query: 389 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 622 +LP ELID+CIGS +WVIMK ++E GTL GFD YVN+VL+DVTEY+ T G K ++LLNGN + +L+PGG P+ Sbjct: 5 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG-VTEKHSEMLLNGNGMCMLIPGGKPE 80
BLAST of CN184781 vs. ExPASy Swiss-Prot
Match: LSM5_YEAST (U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces cerevisiae GN=LSM5 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.539e-12 Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 2 Query: 386 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKLDQ----ILLNGNNIAILVPGGSPDP 625 ++LP E+ID+ I K+ ++++ ++E GTL GFD +VN++LED E+ I E R K+ Q +LL+GNNIAILVPGG P Sbjct: 5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAILVPGGKKTP 89 The following BLAST results are available for this feature:
BLAST of CN184781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN184781 ID=CN184781; Name=CN184781; organism=Citrus sinensis; type=EST; length=820bpback to top |