CN184711

Overview
NameCN184711
Unique NameCN184711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1625 contig Csv1_Contig1625:360..1072. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184711 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 393.275 bits (1009), Expect = 6.859e-109
Identity = 191/219 (87.21%), Postives = 210/219 (95.89%), Query Frame = 1
Query:   55 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFK 711
            TVLVTGAGGRTGQIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAG KQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLVGKDDELL+TETRTIARADVAEVC+QALQ EEAKFK
Sbjct:   78 TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFK 296          
BLAST of CN184711 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.098e-98
Identity = 177/219 (80.82%), Postives = 195/219 (89.04%), Query Frame = 1
Query:   55 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFK 711
            TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AG K IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLVGKDDELLQT+T+T+ RADVAEVCIQAL FEEAK K
Sbjct:    6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNK 224          
BLAST of CN184711 vs. ExPASy Swiss-Prot
Match: Y2446_ARATH (Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 75/245 (30.61%), Postives = 117/245 (47.76%), Query Frame = 1
Query:   10 VSKTEAVKVLSMAKSTVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADD----LFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGAKQIVLVGSM--GGTNLNHPLNSLGN-----GNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFK 711
            + K EA   +   K  V V GA G+TG+ + ++L  R   +A +  VR  E K K    DD    +   D+ +    +  + G D+  ++             A G RP F   +   P +VD  G  N +DA +  G ++ VLV S+   G  +   LN         G  LV K +AE+Y+  SGI YTI+R GGL++ +     +++  +D L +    +I+R  VAEV ++AL  EE+ FK
Sbjct:   35 MEKGEAENAVKTKK--VFVAGATGQTGKRIVEQLLSRG--FAVKAGVRDVE-KAKTSFKDDPSLQIVRADVTEGPDKLAEVIGDDSQAVIC------------ATGFRPGF---DIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKN-DPPTGNVVMEPEDTLYE---GSISRDLVAEVAVEALLQEESSFK 255          
The following BLAST results are available for this feature:
BLAST of CN184711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y2766_ARATH6.859e-10987.21Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH1.098e-9880.82Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
Y2446_ARATH4.571e-1230.61Uncharacterized protein At2g34460, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184711 ID=CN184711; Name=CN184711; organism=Citrus sinensis; type=EST; length=713bp
GAGGGTTGCGTCAGTAAAACCGAAGCAGTCAAAGTTTTATCGATGGCTAA
GAGTACCGTTCTTGTCACCGGCGCTGGTGGTCGAACCGGTCAAATAGTTT
ATAAGAAATTAAAGGAGAGGTCAGAGCAATATGCTGCTAGAGGTTTGGTC
AGAACTGAGGAGAGCAAGCAGAAAATTGGCGGAGCTGATGATCTTTTTAT
TGGTGACATAAGGGACTCTAATAGCATCATTCCTGCAATCCAAGGAATCG
ATGCTCTCATAATTCTCACAAGTGCAGTACCAAAGATGAAACCTGATTTT
GATCCTGCCAAAGGTGGAAGGCCTGAGTTCTACTTTGAAGAGGGTGCATA
TCCTGAACAGGTTGATTGGATTGGTCAGAAAAATCAAATTGATGCTGCTA
AGGCTGCTGGAGCGAAGCAAATTGTGTTGGTTGGATCGATGGGAGGAACA
AATCTTAATCATCCCTTGAACAGTTTGGGCAATGGCAATATATTGGTTTG
GAAAAGAAAGGCTGAGCAGTATTTGGCTGACTCTGGTATTCCATACACAA
TTATAAGGGCCGGAGGCCTTCAGGATAAAGAAGGTGGTATCCGAGAATTA
CTTGTCGGTAAGGATGATGAACTTCTTCAGACAGAAACAAGGACAATTGC
CAGGGCCGATGTTGCCGAAGTCTGCATTCAGGCACTACAGTTTGAGGAGG
CCAAATTTAAGGC
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