CN184710

Overview
NameCN184710
Unique NameCN184710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length400
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1625 contig Csv1_Contig1625:843..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184710 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.021e-36
Identity = 78/105 (74.29%), Postives = 91/105 (86.67%), Query Frame = -2 
Query:   85 NILVWEKERLSSIWLTLVFHTQL*GAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTHF 399
            NILVW+++    +  + + +T +  AGGLQDK+GGIRELLVGKDDELL+TETRTIARADVAEVC+QALQ EEAKFKA DLASKPEGTGTPTKDFKALF+Q+TT F
Sbjct:  222 NILVWKRKAEQYLADSGIPYTII-RAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDLASKPEGTGTPTKDFKALFTQVTTKF 325
[Close]
BLAST of CN184710 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.075e-33
Identity = 73/105 (69.52%), Postives = 86/105 (81.90%), Query Frame = -2 
Query:   85 NILVWEKERLSSIWLTLVFHTQL*GAGGLQDKEGGIRELLVGKDDELLQTETRTIARADVAEVCIQALQFEEAKFKAFDLASKPEGTGTPTKDFKALFSQITTHF 399
            NILVW+++    +  +   +T +  AGGL DKEGG+RELLVGKDDELLQT+T+T+ RADVAEVCIQAL FEEAK KAFDL SKPEGT TPTKDFKALFSQ+T+ F
Sbjct:  150 NILVWKRKAEQYLADSGTPYTII-RAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253
The following BLAST results are available for this feature:
BLAST of CN184710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2766_ARATH1.021e-3674.29Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH3.075e-3369.52Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005P04_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184710 ID=CN184710; Name=CN184710; organism=Citrus sinensis; type=EST; length=400bp
TTCATTTATTCATTCCCCTTTTTATACAAGGCATTACAGTTTTCTAACAT
AAAAACTCAGGAGGAGAATGGCGACTGAGACTCAGAAATGAGTAGTAATT
TGAGAAAAGAGAGCTTTAAAATCCTTTGTGGGTGTGCCAGTTCCCTCAGG
CTTTGAGGCCAGATCAAATGCCTTAAATTTGGCCTCCTCAAACTGTAGTG
CCTGAATGCAGACTTCGGCAACATCGGCCCTGGCAATTGTCCTTGTTTCT
GTCTGAAGAAGTTCATCATCCTTACCGACAAGTAATTCTCGGATACCACC
TTCTTTATCCTGAAGGCCTCCGGCCCCTTATAATTGTGTATGGAATACCA
GAGTCAGCCAAATACTGCTCAGCCTTTCTTTTTCCCAAACCAATATATTG
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