DC887412

Overview
NameDC887412
Unique NameDC887412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: PROSC_HUMAN (Proline synthetase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.495e-32
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = -1
Query:  196 LKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 537
            LKV+VQ+NTSGEESK G+ PS  + +V+H++  CPNLEF GLMTIG    D +  P  +F+ L   R E+CK L IP +Q +LSMGMS DF+ A+E+GSTNVRIGSTIFG R+Y KK
Sbjct:  139 LKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: PROSC_MOUSE (Proline synthetase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.115e-31
Identity = 70/119 (58.82%), Postives = 90/119 (75.63%), Query Frame = -1
Query:  196 KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 543
            +PLKV+VQ+NTSGE+SK G+ PS  + +V+H+  +CP+LEF GLMTIG    D +  P  +F+ L   R E+C+ LGIP EQ +LSMGMS DF+ AIE+GSTNVRIGSTIFG R+Y KK
Sbjct:  137 EPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: PROSC_PONAB (Proline synthetase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.038e-31
Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = -1
Query:  196 LKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 537
            LKV+VQ+NTSGEESK G+ PS  + +V+H++  CPNLEF GLMTIG    D +  P  +F+ L   R E+CK L IP +Q +LSMGMS DF+ AIE+GSTNVRIGS IFG R+Y KK
Sbjct:  139 LKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGSMIFGERDYSKK 255          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: PROSC_BOVIN (Proline synthetase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.210e-30
Identity = 68/117 (58.12%), Postives = 85/117 (72.65%), Query Frame = -1
Query:  196 LKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 537
            LKV+VQ+NTSGE SK G+ P+    LV+H++  CP+LEF GLMTIG    D +  P  +F+ L   R E+C+ LG P EQ +LSMGMS DF+ AIE+GSTNVRIGSTIFG R+Y KK
Sbjct:  139 LKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTIGSFGHDLSQGPNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHAIEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: PROSC_DICDI (Proline synthetase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 8.887e-30
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = -1
Query:  196 KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQ--NCPN-LEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 543
            K L +++QVNTSGEESKSG +P  CL+LVKH  +  NC N L F GLMTIG P+ T    +FK L  C++ + K L IP +  +LSMGMS DFE AIE GST+VR+GS IFG R+Y  K
Sbjct:  136 KKLNIMIQVNTSGEESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGNPNATPDQPDFKCLVDCKNNISKQLNIPLDSIELSMGMSHDFEPAIEFGSTSVRVGSAIFGERDYSNK 254          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: PROSC_CAEEL (Proline synthetase co-transcribed bacterial homolog protein OS=Caenorhabditis elegans GN=F09E5.8 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.848e-21
Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = -1
Query:  196 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYT-STPEN--FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 540
            PL+VLVQVNTSGE++K G+E     +L + + + C NL+F G MTIG  D + ++ EN  F+ L K R    +  G   +  +LSMGMS DF  AI  G+T+VR+GS +FGAREY  K
Sbjct:  127 PLRVLVQVNTSGEDNKGGIEIGEAPKLAEFIRKECQNLKFDGFMTIGSFDNSHASGENPDFEKLFKVRQTWAEQTGESADSVELSMGMSDDFLQAIHQGATSVRVGSKLFGAREYKNK 244          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y461_VIBCH (UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0461 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.218e-19
Identity = 57/117 (48.72%), Postives = 75/117 (64.10%), Query Frame = -1
Query:  199 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPK 540
            PL+VL+QVNTSGE SKSG+EP     L + +S+  PNL   GLM+I   +PDY +    F  LA+ + ++ +       Q D LSMGMSGD + AIE GST VRIG+ IFG R+Y +
Sbjct:  123 PLQVLIQVNTSGEASKSGIEPQQLFTLAELISR-LPNLTLRGLMSIPENVPDYPAQLAAFTQLAELQQQLAQKY----PQIDTLSMGMSGDMQAAIEAGSTIVRIGTAIFGERDYSR 234          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: YPI1_VIBAL (UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 59/115 (51.30%), Postives = 72/115 (62.61%), Query Frame = -1
Query:  205 KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDYTSTPENFKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREY 543
            KPL+VL+QVNTSGE SKSGV  +   EL + +S+  PNL   GLM+I   + DY S    F+ LA  +  +      PE    LSMGMSGD   AIE GST VRIG+ IFGAR+Y
Sbjct:  122 KPLQVLIQVNTSGEASKSGVTEAEVFELAELISR-LPNLTLRGLMSIPANVSDYESQLHEFQKLATLKQTL--EAQFPEIDT-LSMGMSGDMTAAIEAGSTMVRIGTAIFGARDY 232          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: Y112_PASMU (UPF0001 protein PM0112 OS=Pasteurella multocida GN=PM0112 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = -1
Query:  199 RKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP--DYTSTPENFKTLAKCRSEVCKALGIPEEQCD-LSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPK 546
            +KPL VL+Q+N S E+SKSG++P+  L+L K + QN P+L   GLM I  P  D  +  + F  +     ++ +AL  P+ Q D LSMGM+ D   AI+ GST VRIG+ IFGAR+Y K
Sbjct:  118 KKPLNVLIQINISDEDSKSGIQPNEMLDLAKQI-QNLPHLCLRGLMAIPAPTDDLATQEQAFTQMHSLFEQLKQAL--PDAQIDTLSMGMTDDMASAIQCGSTMVRIGTAIFGARDYSK 233          
BLAST of DC887412 vs. ExPASy Swiss-Prot
Match: YKC9_SCHPO (UPF0001 protein C644.09 OS=Schizosaccharomyces pombe GN=SPAC644.09 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.575e-18
Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = -1
Query:  199 PLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPEN---FKTLAKCRSEVCKALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPK 540
            PL V +QVNTSGEE+K GV PS  LEL K V Q+   L   GLMTIG    +   ++   F+ L+  R  +   LGIP +   LSMGMS D+ LAI+ GS +VR+GS+IFG+R   K
Sbjct:  115 PLNVYIQVNTSGEENKGGVTPSKVLELCKQV-QDMKYLRLKGLMTIGSISNSQLSDHNPDFQVLSDLRESLQNELGIPLQ---LSMGMSSDYLLAIKYGSDSVRVGSSIFGSRPTEK 227          
The following BLAST results are available for this feature:
BLAST of DC887412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PROSC_HUMAN9.495e-3258.97Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_MOUSE2.115e-3158.82Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_PONAB8.038e-3158.97Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_BOVIN5.210e-3058.12Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_DICDI8.887e-3056.30Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_CAEEL9.848e-2147.46Proline synthetase co-transcribed bacterial homolo... [more]
Y461_VIBCH9.218e-1948.72UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0... [more]
YPI1_VIBAL3.503e-1851.30UPF0001 protein in pilT-proC intergenic region OS=... [more]
Y112_PASMU3.503e-1846.22UPF0001 protein PM0112 OS=Pasteurella multocida GN... [more]
YKC9_SCHPO4.575e-1848.72UPF0001 protein C644.09 OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionDC887412 EIC Citrus sinensis cDNA clone EIC0336 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887412 ID=DC887412; Name=DC887412; organism=Citrus sinensis; type=EST; length=558bp
TGNACCATCTTATGAAGGGTCAACAAGTATAGCCCCCAAAAATCATCATT
CAAGAGTGAAAAGAAAAACTACAGCATCGAAAGAACAAGTGCATAAAAAA
TATGATTAATCTACTATACTCTAGTTTCAGTACATTAAGATAAATACATA
ACAATAGCCAACGTTTTCAGAACAGGTGAAAAAAAAAGTTTAGTTCTTCT
TCGGATATTCCCTTGCACCAAATATTGTGGATCCAATCCTGACATTGGTG
CTCCCCATTTCAATAGCAAGCTCGAAGTCACCAGACATTCCCATAGACAG
ATCACATTGCTCTTCTGGTATTCCAAGAGCCTTGCATACCTCACTTCTGC
ATTTTGCTAATGTCTTGAAGTTCTCCGGGGTCGATGTGTAATCTGGCATC
CCAATTGTCATTAGGCCACAAAACTCAAGATTCGGACAGTTTTGACTAAC
ATGTTTCACAAGTTCCAGACACCCTGAAGGCTCAACTCCAGATTTCGATT
CTTCTCCACTGGTATTCACTTGAACCAAGACTTTTAAAGGCTTCCTTCCC
ATGGTTTC
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