CN184501
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_ARATH (COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 8.330e-45 Identity = 61/74 (82.43%), Postives = 70/74 (94.59%), Query Frame = 3 Query: 150 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371 M+ AL +ASAI DQRQKIEQYK ILSSV+SSND++QA++FIDH+LSDDVPLVVSRQLLQ+FAQELGRLEPETQK Sbjct: 1 MDEALTNASAIGDQRQKIEQYKLILSSVLSSNDLLQAQRFIDHILSDDVPLVVSRQLLQSFAQELGRLEPETQK 74 HSP 2 Score: 62.003 bits (149), Expect = 8.330e-45 Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 2 Query: 425 KNRCLIIREKLADLYESEQQWSKAAQMLSGIDLDSG 532 + + L+IREKLA LYESEQ+WSKAAQMLSGIDLDSG Sbjct: 92 EEQALVIREKLAGLYESEQEWSKAAQMLSGIDLDSG 127 HSP 3 Score: 38.1206 bits (87), Expect = 8.330e-45 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 367 KREIANYTLAQIQPRVVSFEEQ 432 ++EIA +TL QIQPRVVSFEEQ Sbjct: 73 QKEIAQFTLTQIQPRVVSFEEQ 94
BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_RAT (COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4 PE=2 SV=1) HSP 1 Score: 39.2762 bits (90), Expect = 5.441e-12 Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 2 Query: 443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532 IR++LA +YE E+ W AAQ+L GI L++G Sbjct: 106 IRQRLASIYEKEEDWRNAAQVLVGIPLETG 135 HSP 2 Score: 36.1946 bits (82), Expect = 5.441e-12 Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3 Query: 207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371 +Y+ IL I + Q K F++ M++++V LV+SRQLL F L L T K Sbjct: 25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82 HSP 3 Score: 34.2686 bits (77), Expect = 5.441e-12 Identity = 13/22 (59.09%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 370 REIANYTLAQIQPRVVSFEEQV 435 +E+ ++TL ++QPRV+SFEEQV Sbjct: 82 KEVYHFTLEKVQPRVISFEEQV 103
BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_BOVIN (COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1) HSP 1 Score: 38.1206 bits (87), Expect = 5.441e-12 Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2 Query: 443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532 IR+ LA +YE E+ W AAQ+L GI L++G Sbjct: 106 IRQHLASIYEKEEDWRNAAQVLVGIPLETG 135 HSP 2 Score: 36.5798 bits (83), Expect = 5.441e-12 Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3 Query: 207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371 +Y+ IL I + Q K F++ M++++V LV+SRQLL F L L T K Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVESMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82 HSP 3 Score: 35.039 bits (79), Expect = 5.441e-12 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 370 REIANYTLAQIQPRVVSFEEQV 435 +EI ++TL +IQPRV+SFEEQV Sbjct: 82 KEIYHFTLEKIQPRVISFEEQV 103
BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_PIG (COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1) HSP 1 Score: 38.1206 bits (87), Expect = 7.031e-12 Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2 Query: 443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532 IR+ LA +YE E+ W AAQ+L GI L++G Sbjct: 106 IRQHLASIYEKEEDWRNAAQVLVGIPLETG 135 HSP 2 Score: 36.1946 bits (82), Expect = 7.031e-12 Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3 Query: 207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371 +Y+ IL I + Q K F++ M++++V LV+SRQLL F L L T K Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82 HSP 3 Score: 35.039 bits (79), Expect = 7.031e-12 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 370 REIANYTLAQIQPRVVSFEEQV 435 +EI ++TL +IQPRV+SFEEQV Sbjct: 82 KEIYHFTLEKIQPRVISFEEQV 103
BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_MACFA (COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4 PE=2 SV=1) HSP 1 Score: 38.1206 bits (87), Expect = 7.031e-12 Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2 Query: 443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532 IR+ LA +YE E+ W AAQ+L GI L++G Sbjct: 106 IRQHLASIYEKEEDWRNAAQVLVGIPLETG 135 HSP 2 Score: 36.1946 bits (82), Expect = 7.031e-12 Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3 Query: 207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371 +Y+ IL I + Q K F++ M++++V LV+SRQLL F L L T K Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82 HSP 3 Score: 35.039 bits (79), Expect = 7.031e-12 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 370 REIANYTLAQIQPRVVSFEEQV 435 +EI ++TL +IQPRV+SFEEQV Sbjct: 82 KEIYHFTLEKIQPRVISFEEQV 103
BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_HUMAN (COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1 SV=1) HSP 1 Score: 38.1206 bits (87), Expect = 7.031e-12 Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2 Query: 443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532 IR+ LA +YE E+ W AAQ+L GI L++G Sbjct: 106 IRQHLASIYEKEEDWRNAAQVLVGIPLETG 135 HSP 2 Score: 36.1946 bits (82), Expect = 7.031e-12 Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3 Query: 207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371 +Y+ IL I + Q K F++ M++++V LV+SRQLL F L L T K Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82 HSP 3 Score: 35.039 bits (79), Expect = 7.031e-12 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 370 REIANYTLAQIQPRVVSFEEQV 435 +EI ++TL +IQPRV+SFEEQV Sbjct: 82 KEIYHFTLEKIQPRVISFEEQV 103
BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_MOUSE (COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1 SV=1) HSP 1 Score: 38.1206 bits (87), Expect = 9.084e-12 Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2 Query: 443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532 IR+ LA +YE E+ W AAQ+L GI L++G Sbjct: 106 IRQHLASIYEKEEDWRNAAQVLVGIPLETG 135 HSP 2 Score: 36.1946 bits (82), Expect = 9.084e-12 Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3 Query: 207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371 +Y+ IL I + Q K F++ M++++V LV+SRQLL F L L T K Sbjct: 25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82 HSP 3 Score: 34.6538 bits (78), Expect = 9.084e-12 Identity = 14/22 (63.64%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 370 REIANYTLAQIQPRVVSFEEQV 435 +E+ ++TL +IQPRV+SFEEQV Sbjct: 82 KEVYHFTLEKIQPRVISFEEQV 103
BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_PONAB (COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2 SV=1) HSP 1 Score: 37.7354 bits (86), Expect = 9.084e-12 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 2 Query: 443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532 +R+ LA +YE E+ W AAQ+L GI L++G Sbjct: 106 VRQHLASIYEKEEDWRNAAQVLVGIPLETG 135 HSP 2 Score: 36.1946 bits (82), Expect = 9.084e-12 Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3 Query: 207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371 +Y+ IL I + Q K F++ M++++V LV+SRQLL F L L T K Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82 HSP 3 Score: 35.039 bits (79), Expect = 9.084e-12 Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 370 REIANYTLAQIQPRVVSFEEQV 435 +EI ++TL +IQPRV+SFEEQV Sbjct: 82 KEIYHFTLEKIQPRVISFEEQV 103
BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_DICDI (COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum GN=csn4 PE=2 SV=1) HSP 1 Score: 51.9878 bits (123), Expect = 9.099e-12 Identity = 24/73 (32.88%), Postives = 39/73 (53.42%), Query Frame = 3 Query: 150 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQ 368 ++ L SA++D + K E+YK IL ++ S + K FI H+ + PLV+SR +L +F L + Q Sbjct: 6 LKQILEETSALSDHKTKTEKYKSILQQLVESKQVAPLKVFITHLTDESTPLVISRTILLSFTSSHKTLPEDIQ 78 HSP 2 Score: 30.8018 bits (68), Expect = 9.099e-12 Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 2 Query: 443 IREKLADLYESEQQWSKAAQMLSGIDLDS 529 IR LA LYE ++ W ++A+ L I LDS Sbjct: 103 IRYNLAKLYERQENWRESARCLIAIPLDS 131 HSP 3 Score: 26.1794 bits (56), Expect = 9.099e-12 Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 1 Query: 373 EIANYTLAQIQPRVVSFEEQV 435 E+ + L +IQ RVV+FEEQV Sbjct: 80 ELGIFVLDRIQNRVVAFEEQV 100
BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_DANRE (COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2 SV=1) HSP 1 Score: 37.3502 bits (85), Expect = 4.221e-11 Identity = 21/61 (34.43%), Postives = 32/61 (52.46%), Query Frame = 3 Query: 207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKGNC 380 +Y+ IL + D Q K F++ M++++V LV+SRQLL F L L + K C Sbjct: 25 KYRQILEKALQFTDAEQLEALKAFVEAMVNENVSLVISRQLLTDFCAHLPNLPDDIAKVVC 85 HSP 2 Score: 36.5798 bits (83), Expect = 4.221e-11 Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 2 Query: 443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532 IR+ LA +YE ++ W AAQ+L GI L++G Sbjct: 106 IRQHLATIYEKQEDWRNAAQVLVGIPLETG 135 HSP 3 Score: 32.7278 bits (73), Expect = 4.221e-11 Identity = 13/20 (65.00%), Postives = 18/20 (90.00%), Query Frame = 1 Query: 376 IANYTLAQIQPRVVSFEEQV 435 + ++TL +IQPRV+SFEEQV Sbjct: 84 VCHFTLEKIQPRVISFEEQV 103 The following BLAST results are available for this feature:
BLAST of CN184501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN184501 ID=CN184501; Name=CN184501; organism=Citrus sinensis; type=EST; length=534bpback to top |