CN184493

Overview
NameCN184493
Unique NameCN184493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10338 contig Csv1_Contig10338:223..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184493 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.043e-36
Identity = 76/88 (86.36%), Postives = 81/88 (92.05%), Query Frame = -1
Query:  220 QMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 483
            QMNFKRLSLTDI IDI RVPKKK LI+AMEKADVKNKWE SSWGRKLIVQK+RA+LNDFDRFK+MLAKIKK G+VRQELAKLKKE  A
Sbjct:   47 QMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of CN184493 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.324e-35
Identity = 74/88 (84.09%), Postives = 81/88 (92.05%), Query Frame = -1
Query:  220 QMNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENAA 483
            QMN KRLSLTDI IDI RVPKKK LI+AMEKADVKNKWE SSWGRKLIVQK+RA+LNDFDRFK+MLAKIK+ G+VRQELAKLK+E AA
Sbjct:   47 QMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of CN184493 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.521e-31
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = -1
Query:  223 MNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKKENA 480
            +NFKRLSLTD+KIDI RVPKKK LI A+E ADVKNKW  SSWGRKLIV+K RA+LNDFDRFK+MLAKIK+   VRQELAKLKK  A
Sbjct:   48 INFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133          
BLAST of CN184493 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = -1
Query:  232 MNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 480
            MNFK L LT++K   P   K   +  A EK ++  KWE S   +K+  ++KR +L DF+RFKLM AK  +  L++ E  KL+K
Sbjct:   50 MNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132          
BLAST of CN184493 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  232 MNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 480
            M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++++A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:   50 MPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CN184493 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 5.987e-12
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  232 MNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 480
            M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++++A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:   50 MPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CN184493 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 31/83 (37.35%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  232 MNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 480
            M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++K+A + DFDR+K+M A+  +  L++ E+ KL+K
Sbjct:   50 MPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132          
BLAST of CN184493 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 7.819e-12
Identity = 30/83 (36.14%), Postives = 52/83 (62.65%), Query Frame = -1
Query:  232 MNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 480
            M FK + LTD  +  P    +K +  A +KAD+  KW ++ W +K+  ++++A + DFDRFK+M AK  +  +++ E+ KL+K
Sbjct:   50 MPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132          
BLAST of CN184493 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 31/83 (37.35%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  232 MNFKRLSLTDIKIDIPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLKK 480
            M FK + LTD  +  P   ++K +  A EKAD+  KW ++ W +K+  ++K+A + DFDR+K+M A+  +  L++ E+ KL+K
Sbjct:   50 MPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKIEVKKLQK 132          
BLAST of CN184493 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.619e-11
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  235 MNFKRLSLTDIKID-IPRVPKKKTLIDAMEKADVKNKWESSSWGRKLIVQKKRASLNDFDRFKLMLAKIKKGGLVRQELAKLK 480
            +N KR++LT IK+D I R      +      A V   + +S WG+KL  ++KRA+L+DF RFK+M+A++KK   +  ELAKLK
Sbjct:   50 INVKRIALTSIKVDDIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132          
The following BLAST results are available for this feature:
BLAST of CN184493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RL142_ARATH2.043e-3686.3660S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL141_ARATH1.324e-3584.0960S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL14_PEA7.521e-3177.91Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL14_LUMRU1.575e-1242.1760S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
RL14_RAT5.987e-1236.1460S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_MOUSE5.987e-1236.1460S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_PIG7.819e-1237.3560S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_HUMAN7.819e-1236.1460S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_BOVIN1.021e-1137.3560S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]
RL14_GRIJA6.619e-1143.3760S ribosomal protein L14 OS=Griffithsia japonica ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184493 ID=CN184493; Name=CN184493; organism=Citrus sinensis; type=EST; length=486bp
TTTTTTTTTTTTTTCATGATAAAAATTCTTAAAAAGTAAAACGAGCCCAC
AGACAAGAAGGATTTGCAGGTAAAACTGACTACAGTATCATAATATAAAA
AGCATCTTCTTAAATTGGTCTTAATCTCAGAACTGACACAAAAATAAATG
TAAAACATTCTTGAAGAAAACTTAGCCATCATCATAACAAAATTGGAAGC
TACATATCAGATAACATTAGGCTGCATTCTCCTTCTTCAGCTTCGCAAGC
TCCTGCCTGACCAAACCTCCCTTCTTGATCTTGGCCAACATAAGCTTGAA
CCTGTCAAAGTCGTTAAGTGATGCTCTCTTCTTCTGAACAATCAGCTTTC
TTCCCCAAGAGCTACTCTCCCACTTGTTCTTAACATCAGCCTTCTCCATA
GCATCAATCAATGTCTTCTTCTTCGGTACACGGGGAATGTCAATTTTGAT
ATCAGTCAGTGAAAGCCTCTTGAAGTTCATTTGGCC
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