CX676579

Overview
NameCX676579
Unique NameCX676579
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676579 vs. ExPASy Swiss-Prot
Match: GLUA_DICDI (Lysosomal beta glucosidase OS=Dictyostelium discoideum GN=gluA PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 59/212 (27.83%), Postives = 106/212 (50.00%), Query Frame = 3
Query:    6 ILVAGSHADNLGYQCGGWTINWQG-FSGNNYTRGTTILGAIRSAVDSSTEV-------------VYRDNPDSDFVKSNNFDYAIVAVGEAPYAETAGDSMTLTMLDPDPSVITNVCEAVKCVV-IIISGRPIVIEP-YISSVDALVAAWLPGTE-GQGVTDVLFGDYGFSGKLPRSWFKTVDQLPMNVGDPHY---------DPLFPFDFGL 563
            +L+ G  AD++    GGW+++WQG +  + +  GT+IL  +R   + + +                + + D     + + D  +V +GE P AET GD   L+M   +  ++  + +  K VV I++  RP ++ P  + S  A++ A+LPG+E G+ + ++L G+   SG+LP ++  T      ++G P+Y          PLF F  GL
Sbjct:  490 VLLTGPSADSIRNLNGGWSVHWQGAYEDSEFPFGTSILTGLREITNDTADFNIQYTIGHEIGVPTNQTSIDEAVELAQSSDVVVVVIGELPEAETPGDIYDLSMDPNEVLLLQQLVDTGKPVVLILVEARPRILPPDLVYSCAAVLMAYLPGSEGGKPIANILMGNVNPSGRLPLTYPGTTG----DIGVPYYHKYSENGVTTPLFQFGDGL 697          
BLAST of CX676579 vs. ExPASy Swiss-Prot
Match: BGLX_SALTY (Periplasmic beta-glucosidase OS=Salmonella typhimurium GN=bglX PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 69/262 (26.34%), Postives = 109/262 (41.60%), Query Frame = 3
Query:    6 ILVAGSHADNLGYQCGGWTINWQGFSGNNYTRGTTILGAIRSAVDSSTEVVY-------RDNPDSDFVK-----------------------SNNFDYAIVAVGEAP-YAETAGDSMTLTMLDPDPSVITNVCEAVK-CVVIIISGRPIVIEPYISSVDALVAAWLPGTEG-QGVTDVLFGDYGFSGKLPRSWFKTVDQLP-----MNVGDP------------HYD----PLFPFDFGLK--TESVPSIVARSTSAGVDGK 623
            I V G  AD+     G W+      +     +  T+L  I++AV    +++Y        D    DF+                        +   D  +  VGE+   A  A     +T+      +IT +    K  V+++++GRP+ +       DA++  W  GTEG   + DVLFGDY  SGKLP S+ ++V Q+P     +N G P            ++D    PL+PF +GL   T +V  +   S +   DGK
Sbjct:  413 IAVVGPLADSQRDVMGSWS------AAGVANQSVTVLAGIQNAVGDGAKILYAKGANITNDKGIVDFLNLYEEAVKIDPRSPQAMIDEAVQAAKQADVVVAVVGESQGMAHEASSRTNITIPQSQRDLITALKATGKPLVLVLMNGRPLALVKEDQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPISFPRSVGQIPVYYSHLNTGRPYNPEKPNKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVTLSSPTMQRDGK 668          
The following BLAST results are available for this feature:
BLAST of CX676579 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GLUA_DICDI4.741e-1527.83Lysosomal beta glucosidase OS=Dictyostelium discoi... [more]
BGLX_SALTY1.291e-1226.34Periplasmic beta-glucosidase OS=Salmonella typhimu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_70H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70H01-O2-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676579 ID=CX676579; Name=CX676579; organism=Citrus sinensis; type=EST; length=740bp
CAAAGATCCTAGTTGCTGGTAGTCATGCTGATAATTTGGGATATCAATGC
GGCGGGTGGACGATCAACTGGCAAGGATTTAGTGGCAACAACTACACAAG
GGGGACCACCATCCTTGGTGCCATAAGATCTGCTGTAGACTCAAGTACAG
AAGTTGTCTACCGTGACAACCCTGATAGTGATTTTGTCAAGTCCAACAAC
TTTGATTATGCCATTGTTGCTGTTGGTGAGGCCCCTTATGCTGAAACCGC
AGGCGATAGCATGACCCTCACAATGTTGGACCCTGATCCAAGCGTCATCA
CCAATGTCTGCGAAGCTGTTAAGTGTGTTGTTATCATAATTTCTGGCAGA
CCTATAGTAATTGAACCATATATTTCCTCGGTAGATGCCTTGGTAGCTGC
ATGGCTACCAGGCACTGAAGGCCAAGGCGTGACTGATGTCCTCTTTGGGG
ATTATGGATTTAGTGGAAAGCTCCCAAGATCATGGTTTAAAACTGTAGAT
CAACTACCAATGAATGTTGGGGATCCGCACTACGATCCTCTCTTCCCCTT
TGATTTTGGACTTAAAACAGAATCAGTTCCAAGCATTGTAGCCAGGTCAA
CCTCAGCTGGTGTTGATGGGAAACCATTTGTATTCCTGGTCATGATTTCT
CTGATTTTTGCGTTGTATTTCACAGGTTAAACTCTACTTATTGAAATTCC
GAGAAGAAGCCAGAAGGCATTAAAGAAGAAACTGAATTCA
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