CN189188
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: NLAL1_ARATH (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 2.113e-49 Identity = 91/107 (85.05%), Postives = 101/107 (94.39%), Query Frame = -2 Query: 290 GFRDEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQAQAG 610 GFRDEGPP+EVVE+++F+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FS+KMMEGIVATSYSPGDKF+IDP KLLPLARFLPQPKGQ+ G Sbjct: 48 GFRDEGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIVATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGG 154
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: NLAL2_ARATH (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 2.673e-44 Identity = 85/106 (80.19%), Postives = 95/106 (89.62%), Query Frame = -2 Query: 299 GFGFRDEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPKGQA 616 G G DEGPP+EVVE+++FLHACEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FS+KM EGIVATSYS GDKF+I P KLLPL+RFLPQPKGQ+ Sbjct: 33 GGGNYDEGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDKFFISPEKLLPLSRFLPQPKGQS 138
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_CHAGB (H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum GN=GAR1 PE=3 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 1.920e-34 Identity = 67/104 (64.42%), Postives = 81/104 (77.88%), Query Frame = -2 Query: 308 GGFGFRDEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619 GGF RD GPPA V+E+ F+HACEG+ V + TN K+P FNAPIYL+NKT +GKVDE+ GPIN+ YF++K EGI ATS+ GDKFYI KLLPL RFLP+PK Sbjct: 24 GGFQQRDMGPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEKLLPLERFLPKPK 127
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_KLULA (H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis GN=GAR1 PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.275e-34 Identity = 67/106 (63.21%), Postives = 83/106 (78.30%), Query Frame = -2 Query: 308 GGFGFR--DEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619 GGFG R +GPP V+E+ +FLH CEGD V + N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F+VK +G+ A S+S GDKFYI P KLLP+ RFLP+PK Sbjct: 20 GGFGGRAAPQGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTVKCSDGVKAESFSEGDKFYIAPDKLLPIERFLPKPK 125
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_BOTFB (H/ACA ribonucleoprotein complex subunit 1 OS=Botryotinia fuckeliana (strain B05.10) GN=GAR1 PE=3 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 7.295e-34 Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = -2 Query: 308 GGFGFRDEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619 GGF RD GPPA+V + SFLHA EG+ V + N KIP+FNAPIYL+NKT IGKVDEI GPIN+ YF++K EGI ATS+ GDKFYI KLLPL +FLP+PK Sbjct: 34 GGFQQRDNGPPADVFAMGSFLHASEGEIVCESINTKIPYFNAPIYLENKTSIGKVDEILGPINQVYFTIKPTEGIQATSFKTGDKFYIGGDKLLPLEKFLPKPK 137
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_NEOFI (H/ACA ribonucleoprotein complex subunit 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=gar1 PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.244e-33 Identity = 66/104 (63.46%), Postives = 83/104 (79.81%), Query Frame = -2 Query: 308 GGFGFRDEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619 GGF + GPPA+V+E+ +F+HACEG+ V + N KIP+FNAPIYL+NKT IGKVDE+ GPIN+ YF++K EGIVATS+ PGDK YI KLLPL +FLP+PK Sbjct: 28 GGFQAQT-GPPAQVLEMGTFMHACEGEMVCESVNPKIPYFNAPIYLENKTPIGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKVYIGGDKLLPLEKFLPKPK 130
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_COCIM (H/ACA ribonucleoprotein complex subunit 1 OS=Coccidioides immitis GN=GAR1 PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.625e-33 Identity = 63/96 (65.62%), Postives = 78/96 (81.25%), Query Frame = -2 Query: 308 GPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 595 GPP V+E+ SF+HACEG+ V + N KIP+FNAPIYL+NKT +GKVDE+ GPIN+ YF++K EGIVATS+ PGDKFYI KLLPL +FLP+PK Sbjct: 35 GPPTTVLEMGSFMHACEGEMVCESINPKIPYFNAPIYLENKTPVGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKFYIGGDKLLPLEKFLPKPK 130
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_CANGA (H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata GN=GAR1 PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.625e-33 Identity = 65/113 (57.52%), Postives = 82/113 (72.57%), Query Frame = -2 Query: 308 GGFGFR---------DEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619 GGFG R +GPP V+E+ F+H CEGD V + N K+P+FNAPIYL+NKTQ+GKVDEI GP+NE YF++K EG+ ATS+ GDKFYI P KLLP+ RF+P+PK Sbjct: 16 GGFGGRGGARGGRPIQQGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYFTIKCGEGVQATSFKEGDKFYIAPDKLLPIERFIPKPK 128
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_ASHGO (H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii GN=GAR1 PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.176e-33 Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = -2 Query: 308 GGFGFRD--EGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619 GGFG R +GPP VVE+ +F+H CEGD V + N KIP+FNA IYL+NKT++GKVDEI GP+NE +F++K EG+ A+S+ GDKFYI P KLLP+ RF+P+PK Sbjct: 23 GGFGGRQFQQGPPDSVVEMGAFMHDCEGDIVCRSINTKIPYFNAMIYLENKTEVGKVDEILGPLNEVFFTIKCAEGVKASSFKDGDKFYISPEKLLPIERFIPKPK 128
BLAST of CN189188 vs. ExPASy Swiss-Prot
Match: GAR1_YEAST (H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae GN=GAR1 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 8.917e-32 Identity = 66/116 (56.90%), Postives = 83/116 (71.55%), Query Frame = -2 Query: 308 GGF--GFR----------DEGPPAEVVEISSFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSPGDKFYIDPSKLLPLARFLPQPK 619 GGF GFR +GPP V+E+ +FLH CEGD V + N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F++K +G+ ATS+ GDKFYI KLLP+ RFLP+PK Sbjct: 12 GGFRGGFRGGRTGSARSFQQGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSFKEGDKFYIAADKLLPIERFLPKPK 127 The following BLAST results are available for this feature:
BLAST of CN189188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >CN189188 ID=CN189188; Name=CN189188; organism=Citrus sinensis; type=EST; length=620bpback to top |