CN189053

Overview
NameCN189053
Unique NameCN189053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7437 contig Csv1_Contig7437:474..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189053 vs. ExPASy Swiss-Prot
Match: A115_TOBAC (Auxin-induced protein PCNT115 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.947e-14
Identity = 31/39 (79.49%), Postives = 38/39 (97.44%), Query Frame = -2 
Query:  355 MRKGCTPAQLALAWVHHQGDDLCPIPGTTKIEQLNENIQ 471
            +RKGCTP+QLALAWVHHQG+D+CPIPGTTKIE LN+N++
Sbjct:  264 VRKGCTPSQLALAWVHHQGNDVCPIPGTTKIENLNQNMK 302
[Close]
BLAST of CN189053 vs. ExPASy Swiss-Prot
Match: YAKC_SCHPO (Aldo-keto reductase yakc [NADP+] OS=Schizosaccharomyces pombe GN=yakc PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.262e-12
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = -2 
Query:  226 TPAQLALAWVHHQGDDLCPIPGTTKIEQLNENIQALSVKLAPEEMAELDSIASADAVKGDRYPDGVTTYKDSDTPPL 456
            TP QL+LAW+  QGDD+ PIPGT +++ L EN  AL VKL+   + E+        V G RYP G  +    DTPP+
Sbjct:  262 TPGQLSLAWLLAQGDDILPIPGTKRVKYLEENFGALKVKLSDATVKEIREACDNAEVIGARYPPGAGSKIFMDTPPM 338
The following BLAST results are available for this feature:
BLAST of CN189053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
A115_TOBAC5.947e-1479.49Auxin-induced protein PCNT115 OS=Nicotiana tabacum... [more]
YAKC_SCHPO4.262e-1245.45Aldo-keto reductase yakc [NADP+] OS=Schizosaccharo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001D22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189053 ID=CN189053; Name=CN189053; organism=Citrus sinensis; type=EST; length=472bp
ATTACGCCTCTTGTTTTATTTAATGCGTCTCAAACATTTTGATTACATCN
AATCCNAGCTCTTAAATCTAATTAAACCTACTTACAAAATACATACAAGG
ATTTAACCCCGAGCACAACATAGGAACTCAATGCAATTGCAAAACACTTG
TTATGCTTGTAAAATGTGCAACAGGGTACCCAGAAGGCAGAATATCCACT
TCCTTCAAGAAGGTCTCCATGAAGACAGAGGTGGAGTATCAGAGTCTTTG
TAGGTAGTTACTCCATCCGGATATCGATCACCCTTTACAGCATCCGCCGA
AGCAATGGAATCAAGTTCAGCCATTTCTTCTGGAGCTAATTTCACTGAGA
GTGCTTGAATATTTTCATTGAGCTGTTCGATCTTGGTGGTTCCAGGTATG
GGACACAGGTCATCACCTTGGTGGTGAACCCAGGCTAATGCAAGCTGTGC
GGGGGTGCATCCTTTTCTCATT
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