CN188962
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7A_ARATH (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2) HSP 1 Score: 199.519 bits (506), Expect = 1.424e-50 Identity = 91/97 (93.81%), Postives = 97/97 (100.00%), Query Frame = 1 Query: 109 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIYQADKYRKGACE 399 MATASVAFKSREDHRKQ+ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN+E+PSLKHQRKWKSDPNYTKSWYDRGAKI+QA+KYRKGAC+ Sbjct: 1 MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLKHQRKWKSDPNYTKSWYDRGAKIFQAEKYRKGACQ 97
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSJ (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50 Identity = 90/97 (92.78%), Postives = 96/97 (98.97%), Query Frame = 1 Query: 109 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIYQADKYRKGACE 399 MATASV+FKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNA++PSLKHQR WKSDPNYTKSWYDRGAK++QA+KYRKGACE Sbjct: 1 MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKPSLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACE 97
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSI (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2) HSP 1 Score: 197.208 bits (500), Expect = 7.068e-50 Identity = 90/97 (92.78%), Postives = 96/97 (98.97%), Query Frame = 1 Query: 109 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIYQADKYRKGACE 399 MATASV+FKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNA++PSLKHQR WKSDPNYTKSWYDRGAK++QA+KYRKGACE Sbjct: 1 MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKPSLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGACE 97
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7B_ARATH (Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis thaliana GN=At4g37120 PE=2 SV=3) HSP 1 Score: 172.94 bits (437), Expect = 1.427e-42 Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 1 Query: 109 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIYQADKYRKGAC 396 MATASVAFKSREDHRK+LELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL +E+PSLKHQ+ WK +P K WYDRG KIYQA++YRKGAC Sbjct: 1 MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQPSLKHQKNWKIEPEPKKIWYDRGKKIYQAEQYRKGAC 96
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_DICDI (Pre-mRNA-splicing factor slu7 OS=Dictyostelium discoideum GN=slu7 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25 Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 1 Query: 109 MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNYTKSWYDRGAKIYQ-ADKYRKGACE 399 MA++ K+R++++K+ EL+EARKAG APAE+DE+GKEINPHIP+Y+ APWYLNA +PSLKHQR + K WY RGA + A K+RKGACE Sbjct: 1 MASSISHRKTRDEYKKEKELDEARKAGNAPAELDEEGKEINPHIPEYILKAPWYLNANKPSLKHQR-GVTKKEMDKGWYLRGATTGEAATKFRKGACE 97
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_CHICK (Pre-mRNA-splicing factor SLU7 OS=Gallus gallus GN=SLU7 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.318e-23 Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 1 Query: 136 SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-AERPSLKHQR-KWKSDPNYTKS--WYDRGAKIYQ-ADKYRKGACE 399 +RED RK+ ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ ++RP+LKHQR + + Y+ S WY RG K + A +YRKGACE Sbjct: 27 TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGDWYKRGVKEHSIATRYRKGACE 119
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_CRYNE (Pre-mRNA-splicing factor SLU7 OS=Cryptococcus neoformans GN=SLU7 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22 Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 1 Query: 136 SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAERPSLKHQRKWKSDPNY-TKSWYDRGAKI-YQADKYRKGACE 399 SRE++R+Q +LE ARKAG APA +DE G INPHIP+Y++ APWY + RPSL HQR + P+ WYDRGAK A KYRKGACE Sbjct: 14 SREEYRRQKDLEAARKAGTAPAALDEQGNAINPHIPEYITKAPWYADTGRPSLAHQRINEQGPHLKLDEWYDRGAKAGPAAKKYRKGACE 103
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_BOVIN (Pre-mRNA-splicing factor SLU7 OS=Bos taurus GN=SLU7 PE=2 SV=2) HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22 Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1 Query: 136 SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-AERPSLKHQR-KWKSDPNYTKS--WYDRGAKIYQ-ADKYRKGACE 399 +RED RK+ ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ ++RP+LKHQR + + Y+ S WY RG K KYRKGACE Sbjct: 29 TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGACE 121
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_RAT (Pre-mRNA-splicing factor SLU7 OS=Rattus norvegicus GN=Slu7 PE=2 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22 Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 1 Query: 136 SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-AERPSLKHQRKWKSDPNYTKS---WYDRGAKIYQ-ADKYRKGACE 399 +RED RK+ ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ ++RP+LKHQR S WY RG K KYRKGACE Sbjct: 29 TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGACE 121
BLAST of CN188962 vs. ExPASy Swiss-Prot
Match: SLU7_MOUSE (Pre-mRNA-splicing factor SLU7 OS=Mus musculus GN=Slu7 PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 3.655e-22 Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = 1 Query: 136 SREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN-AERPSLKHQRKWKSDPNYTKS---WYDRGAKIYQ-ADKYRKGACE 399 +RED RK+ ELEE RK G APAEVDE+GK+INPHIPQY+SS PWY++ ++RP+LKHQR S WY RG K KYRKGACE Sbjct: 29 TREDWRKKKELEEQRKLGNAPAEVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGACE 121 The following BLAST results are available for this feature:
BLAST of CN188962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188962 ID=CN188962; Name=CN188962; organism=Citrus sinensis; type=EST; length=701bpback to top |