CN182119

Overview
NameCN182119
Unique NameCN182119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN182119_ssr109 microsatellite CN182119_ssr109:109..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1028 contig Csv1_Contig1028:152..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML41_ARATH (Probable calcium-binding protein CML41 OS=Arabidopsis thaliana GN=CML41 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.330e-34
Identity = 75/142 (52.82%), Postives = 94/142 (66.20%), Query Frame = 3
Query:  180 EDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDF----TRMXXXXXXXXXXXXXXXXAFEMFELEK-KGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            ++EL+QVF HFD DGDGKISA ELR YFGS+GEY+S+E A+ AI             +DF    TR                 AFEMFE+EK  GCITPKGLQ+ML +LG+S++Y +C AMI+ +D DGNG+LD+HEF QMM
Sbjct:   62 KEELRQVFSHFDSDGDGKISAFELRHYFGSVGEYISHEAAQEAINEVDTDADGSLGFEDFVGLMTRRDLYGDGEVDGDGELKTAFEMFEVEKGSGCITPKGLQKMLVKLGESRTYGECEAMIKFYDIDGNGILDFHEFRQMM 203          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML19_ORYSJ (Putative calcium-binding protein CML19 OS=Oryza sativa subsp. japonica GN=CML19 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 3
Query:  186 ELKQVFRHFDGDGDGKISALELRAYF-GSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXX--AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            E ++VF  FD D DGKISA ELR     ++GE MS EEA A +             ++FT++                  AF M+E+E +G ITP  L+RML++LG  +  ++C  MI  FD DG+GV+ + EF  MM
Sbjct:    7 EFRRVFSAFDRDADGKISAAELRLCMKAALGEDMSAEEAEALVSSADTDDDGLLDEEEFTKLAVQLEMGDEEERCRGLMEAFRMYEMEGEGRITPASLKRMLSKLGSHQGIEECQTMICRFDLDGDGVISFEEFKIMM 144          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML23_ORYSJ (Putative calcium-binding protein CML23 OS=Oryza sativa subsp. japonica GN=CML23 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.836e-17
Identity = 55/145 (37.93%), Postives = 73/145 (50.34%), Query Frame = 3
Query:  183 DELKQVFRHFDGDGDGKISALELRAYF-GSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXX--------AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            DE ++VF  FD DGDGKISA ELR     S+GE M  EE +A +             ++F R+                        AF M+E+E +GCITP  L+ ML++LG      +C AMI  FD +G+GVL + EF  MM
Sbjct:    5 DEFRRVFGSFDQDGDGKISATELRLCVKASLGEDMPDEEVQALMALADTDGDGLLDEEEFVRLVTEMEADGDEEEDDDDETCRCLREAFAMYEMEGRGCITPLSLKLMLSKLGTHLDVAECQAMICRFDMNGDGVLTFDEFKTMM 149          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML39_ARATH (Calcium-binding protein CML39 OS=Arabidopsis thaliana GN=CML39 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  177 KEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXX--AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            K  +L+ VF + D + DG+ISA EL+  F ++GE MS EEA AA+              +F  +                  AF M+  + + CITP  L+ ML +LG+S++ D C  MIQ FD + +GVL + EF+ MM
Sbjct:   19 KNRDLEAVFAYMDANRDGRISAEELKKSFKTLGEQMSDEEAEAAVKLSDIDGDGMLDINEFALLIKGNDEFTEEEKKRKIMEAFRMYIADGEDCITPGSLKMMLMKLGESRTTDDCKVMIQAFDLNADGVLSFDEFALMM 158          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML38_ARATH (Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 48/138 (34.78%), Postives = 75/138 (54.35%), Query Frame = 3
Query:  177 KEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXXAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            K  EL+ VF + D + DG+IS  EL+  F ++GE +S EEA AA+             ++F+++                AF ++  E + CITP+ L+ ML +LG+S++ D C  MI  FD + +GVL + EF+ MM
Sbjct:   40 KNRELEAVFSYMDANRDGRISPEELQKSFMTLGEQLSDEEAVAAVRLSDTDGDGMLDFEEFSQLIKVDDEEEKKMELKG-AFRLYIAEGEDCITPRSLKMMLKKLGESRTTDDCRVMISAFDLNADGVLSFDEFALMM 176          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML31_ORYSJ (Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica GN=CML31 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 54/139 (38.85%), Postives = 70/139 (50.36%), Query Frame = 3
Query:  186 ELKQVFRHFDGDGDGKISALELRAYFGS-IGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXX---AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            E   +F  FD DGDG+ISA ELR    + +GE +S EEA   +              +F R+                   AF M+E+E +GCITP  L+RML RLG  +  D C AMI  FD +G+GVL + EF  MM
Sbjct:   11 ESSALFATFDHDGDGRISAAELRLCMKTTLGEEVSDEEAGQLVASVDADGDGLLCEAEFVRLVQAAEVEEEDERRGTGLREAFGMYEMEGEGCITPTSLRRMLRRLGSDQDIDDCRAMICRFDLNGDGVLSFDEFKIMM 149          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML15_ORYSJ (Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica GN=CML15 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 54/187 (28.88%), Postives = 82/187 (43.85%), Query Frame = 3
Query:   36 FFSNKGHGLSLHRRRXXXXXXXXXXXXXXXXXXXXXXXXACEPKKITKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXX-AFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMMA 593
            FFS KG G S  R R                        A +P+    EDE ++VFR FD +GDG+IS  EL A F S+G  ++ +E    +              +F  +                 AF +F+ +  G ITP  L R+L  +G++ +  +C  MI   D +G+G++++ EF  MMA
Sbjct:    7 FFSRKGRGNSSGRSRSMREAAMNVDWSPRPSDLAAAA--AAKPRPPAAEDETERVFRKFDANGDGRISRAELAALFRSVGHAVTDDEVARMMQEADSDGDGYISLGEFAAISAPPPGDAAAAEEDLRHAFGVFDADGNGVITPAELARVLRGIGEAATVAQCRRMIDGVDRNGDGLINFEEFKLMMA 191          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML26_ARATH (Probable calcium-binding protein CML26 OS=Arabidopsis thaliana GN=CML26 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 3
Query:  186 ELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXXAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMMA 593
            ELK+VF  FD +GDGKIS  EL   F S+G   + EE    +             ++F  +                AF++++  K G I+   + ++LNRLG + S + CV MI   DTDG+G +++ EF +MM+
Sbjct:   20 ELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEEFATICRSSSSAVEIRE----AFDLYDQNKNGLISSSEIHKVLNRLGMTCSVEDCVRMIGHVDTDGDGNVNFEEFQKMMS 151          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.329e-13
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 3
Query:  174 TKEDELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXXAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            T+  EL+ VF+ FD +GDGKIS+ EL A   S+G  +  EE   AI             ++F  +                AF +++++  G I+ + L  +L  LGD  S  +C  MI   D DG+G +D+ EF  MM
Sbjct:   33 TEIRELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKMIGGVDKDGDGTIDFEEFKIMM 171          
BLAST of CN182119 vs. ExPASy Swiss-Prot
Match: CML27_ARATH (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.736e-13
Identity = 44/136 (32.35%), Postives = 68/136 (50.00%), Query Frame = 3
Query:  183 DELKQVFRHFDGDGDGKISALELRAYFGSIGEYMSYEEARAAIXXXXXXXXXXXXXQDFTRMXXXXXXXXXXXXXXXXAFEMFELEKKGCITPKGLQRMLNRLGDSKSYDKCVAMIQVFDTDGNGVLDYHEFSQMM 590
            +ELK+VF  FD +GDGKIS LEL   F ++G   +  E    +              +F+ +                AF++++ +K G I+   L ++LNRLG S S + C  MI   D DG+G +++ EF +MM
Sbjct:   22 EELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFSTLCRSSSSAAEIRD----AFDLYDQDKNGLISASELHQVLNRLGMSCSVEDCTRMIGPVDADGDGNVNFEEFQKMM 153          
The following BLAST results are available for this feature:
BLAST of CN182119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CML41_ARATH2.330e-3452.82Probable calcium-binding protein CML41 OS=Arabidop... [more]
CML19_ORYSJ1.162e-1738.41Putative calcium-binding protein CML19 OS=Oryza sa... [more]
CML23_ORYSJ9.836e-1737.93Putative calcium-binding protein CML23 OS=Oryza sa... [more]
CML39_ARATH1.285e-1635.71Calcium-binding protein CML39 OS=Arabidopsis thali... [more]
CML38_ARATH2.191e-1634.78Calcium-binding protein CML38 OS=Arabidopsis thali... [more]
CML31_ORYSJ2.191e-1638.85Probable calcium-binding protein CML31 OS=Oryza sa... [more]
CML15_ORYSJ3.498e-1428.88Probable calcium-binding protein CML15 OS=Oryza sa... [more]
CML26_ARATH1.329e-1333.09Probable calcium-binding protein CML26 OS=Arabidop... [more]
CML25_ARATH1.329e-1332.37Probable calcium-binding protein CML25 OS=Arabidop... [more]
CML27_ARATH1.736e-1332.35Probable calcium-binding protein CML27 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001P16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN182119 ID=CN182119; Name=CN182119; organism=Citrus sinensis; type=EST; length=598bp
GGCTGCAGGGTTCTAAGCCATCTAATTCTAAGTGGTTCTTTTCTAACAAG
GGTCATGGGTTAAGCCTTCACCGTCGTCGATCAAAGTCAAAGTCTAGTTC
TTCATCGTCAACAACAACAACAACATTAAGCTCTCCAAACTCCTCCTTGT
CTGCATGCGAACCCAAAAAGATCACAAAAGAAGATGAGTTGAAGCAAGTC
TTTCGTCATTTTGATGGTGATGGAGACGGGAAAATTTCGGCTCTCGAACT
TAGGGCTTACTTTGGTTCCATTGGTGAGTACATGTCATACGAAGAGGCTC
GAGCAGCGATTGATGATTTTGACACCGATGGTGACAGTTTATTGGATTTT
CAAGATTTCACGAGGATGCTGCTCAAAGACGATCGAGGCGATGGCGATGA
CGAGGATCTGAAGAAGGCCTTTGAGATGTTTGAATTGGAGAAGAAAGGGT
GCATAACTCCAAAAGGTTTGCAAAGGATGTTGAATCGCCTTGGAGATTCT
AAATCTTATGACAAGTGCGTTGCCATGATTCAAGTCTTTGATACTGATGG
CAACGGAGTTCTTGATTATCATGAGTTTTCCCAAATGATGGCTTAATT
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