CN188885
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.848e-28 Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 2 Query: 491 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694 DRTRSKRFLEIQ LRE K+EYDLKTA+SL+KQMSSTKF ETAEAHFRLNIDPKYNDQQLRATVSLP+G Sbjct: 115 DRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKG 182
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.058e-26 Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 2 Query: 488 RDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694 RDRTRSKRFLEIQ LRE KKEYD+ TAISLLKQ ++T+F E+ EAHFRLNIDPKYNDQQLRATVSLP+G Sbjct: 108 RDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKG 176
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.054e-25 Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 2 Query: 491 DRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694 DR RSKRFLEIQ LRE KKEYDLKTAISL+K+ + TKF ET EAHFRLNIDPKYNDQQLRATVSLP+G Sbjct: 53 DRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKG 120
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12 Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 2 Query: 500 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694 RSKR+ + +L E K Y + A+ LLK++++ KF ETAEAH RLN+DPKY DQQ+RATV LP G Sbjct: 3 RSKRYQSLCSLIEPKL-YSPQEALKLLKKLATAKFVETAEAHIRLNLDPKYTDQQIRATVVLPHG 66
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12 Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 2 Query: 494 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694 + RS+R E+ E ++ Y+ AI LLKQ+S+ KF ET E H RL IDPKYNDQQLRATV+LP G Sbjct: 2 KKRSRRMQELVGKVE-EQLYEPLEAIQLLKQISTAKFIETVEVHCRLGIDPKYNDQQLRATVTLPNG 67
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.688e-11 Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 2 Query: 503 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694 S+R + Q E K Y+ A++LLK++++ KF ETAEAH RL IDPKY DQQLR TVSLP+G Sbjct: 6 SRRLRDAQAKVENKA-YEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVSLPKG 68
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11 Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 2 Query: 503 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694 SKR+ E++ L + KEYDL A+ L K++++ KF ET E H + NID + +DQQ+R+T+SLP G Sbjct: 5 SKRYNEVRKLVDRTKEYDLNEAVDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTISLPHG 68
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11 Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 2 Query: 503 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694 S+R E+Q E + EY A+SLLK+ ++ KF E AEAH RL IDPKY DQQLR TV+LP+G Sbjct: 6 SRRLRELQAKVEDR-EYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVALPKG 68
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RL1_KOSOT (50S ribosomal protein L1 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11 Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 2 Query: 500 RSKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694 RSKR+LE + L + K Y + AI LLKQM S KF E+ E H + I+P +DQQ+R T+SLP G Sbjct: 4 RSKRYLEARKLVDRTKAYTIDEAIELLKQMPSAKFDESIELHIKTGIEPSKSDQQVRGTISLPHG 68
BLAST of CN188885 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11 Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 2 Query: 503 SKRFLEIQNLREGKKEYDLKTAISLLKQMSSTKFTETAEAHFRLNIDPKYNDQQLRATVSLPQG 694 SKRF E + + Y A+ LLK+ ++ KF E+AEAH RL IDPKY DQQLR TVSLP+G Sbjct: 6 SKRFKEALAKVDQNQTYAPLEALQLLKETATAKFNESAEAHIRLGIDPKYTDQQLRTTVSLPKG 69 The following BLAST results are available for this feature:
BLAST of CN188885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188885 ID=CN188885; Name=CN188885; organism=Citrus sinensis; type=EST; length=698bpback to top |