CN182004
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_SOYBN (Transcription initiation factor IIB OS=Glycine max GN=TFIIB1 PE=2 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 4.548e-56 Identity = 109/126 (86.51%), Postives = 111/126 (88.10%), Query Frame = 3 Query: 3 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 380 KEYIVKQLGLE G +VEMGTIHAGDFMRRFCSNL MNN SEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP Sbjct: 188 KEYIVKQLGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B2_ARATH (Transcription initiation factor IIB-2 OS=Arabidopsis thaliana GN=TFIIB2 PE=2 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 4.257e-54 Identity = 107/126 (84.92%), Postives = 110/126 (87.30%), Query Frame = 3 Query: 3 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 380 KEYIVKQLGLETGQ VEMGTIHAGDFMRRFCSNLGM N SEEFDIRRSPISIAAAVIYIITQLSD+KKPL+DISVATGVAEGTIRNSYKDLYPH+SKIIP WYAKEEDLKNL SP Sbjct: 187 KEYIVKQLGLETGQLVEMGTIHAGDFMRRFCSNLGMTNQTVKAAQESVQKSEEFDIRRSPISIAAAVIYIITQLSDEKKPLRDISVATGVAEGTIRNSYKDLYPHLSKIIPAWYAKEEDLKNLQSP 312
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B1_ARATH (Transcription initiation factor IIB-1 OS=Arabidopsis thaliana GN=TFIIB1 PE=1 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 2.186e-50 Identity = 100/126 (79.37%), Postives = 106/126 (84.13%), Query Frame = 3 Query: 3 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 380 K+YIVK LGLE GQSV++GTIHAGDFMRRFCSNL M+N SEEFDIRRSPISIAA VIYIITQLSDDKK LKDIS ATGVAEGTIRNSYKDLYPH+SKI P+WYAKEEDLKNL SP Sbjct: 187 KDYIVKTLGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKSEEFDIRRSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPSWYAKEEDLKNLSSP 312
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_ORYSJ (Transcription initiation factor IIB OS=Oryza sativa subsp. japonica GN=TFIIB PE=1 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 3.729e-50 Identity = 98/126 (77.78%), Postives = 108/126 (85.71%), Query Frame = 3 Query: 3 KEYIVKQLGLETGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 380 KE+IVKQL +E GQS+EMGTIHAGDF+RRFCS LGMNN SEE DIRRSPISIAAAVIY+ITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYP+ S++IPN YAKEEDLKNLC+P Sbjct: 187 KEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEELDIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKEEDLKNLCTP 312
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_DROVI (Transcription initiation factor IIB OS=Drosophila virilis GN=TfIIB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14 Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 3 Query: 63 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 335 I DFM RFC+NL + N + E DI RSPIS+AAA IY+ +Q S+ K+ K+I GVA+ TIR SYK +YPH +K+ P Sbjct: 186 ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 278
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_DROME (Transcription initiation factor IIB OS=Drosophila melanogaster GN=TfIIB PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.594e-14 Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 3 Query: 63 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 335 I DFM RFC+NL + N + E DI RSPIS+AAA IY+ +Q S+ K+ K+I GVA+ TIR SYK +YPH +K+ P Sbjct: 208 ITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPGRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFP 300
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_XENLA (Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.122e-13 Identity = 40/93 (43.01%), Postives = 53/93 (56.99%), Query Frame = 3 Query: 63 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIP 335 I GDFM RFCSNLG+ + E D+ RSPIS+AAA IY+ +Q S +K+ K+I GVA+ TIR SY+ +YP + P Sbjct: 209 ITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFP 301
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_DICDI (Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.264e-12 Identity = 43/105 (40.95%), Postives = 62/105 (59.05%), Query Frame = 3 Query: 33 ETGQSV-EMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 338 ET SV + TI + DF RFCS L + N + + I +SPIS+ AA IY+++QLS +K+ K I+ +GV+E TIRN+YKDLY ++IP+ Sbjct: 207 ETFASVLNLQTISSEDFTSRFCSTLKLPNDVKKGAEHVSKMAMDMGIVAGKSPISVTAASIYMVSQLSPEKRTQKQIADVSGVSEVTIRNAYKDLYAKRDQLIPS 311
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_RAT (Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11 Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 3 Query: 63 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 338 I GDFM RFCSNL + + E D+ RSPIS+AAA IY+ +Q S +K+ K+I GVA+ TIR SY+ +YP + P+ Sbjct: 209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302
BLAST of CN182004 vs. ExPASy Swiss-Prot
Match: TF2B_MOUSE (Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-11 Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 3 Query: 63 IHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDI--RRSPISIAAAVIYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPN 338 I GDFM RFCSNL + + E D+ RSPIS+AAA IY+ +Q S +K+ K+I GVA+ TIR SY+ +YP + P+ Sbjct: 209 ITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPS 302 The following BLAST results are available for this feature:
BLAST of CN182004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CN182004 ID=CN182004; Name=CN182004; organism=Citrus sinensis; type=EST; length=667bpback to top |