CN181748

Overview
NameCN181748
Unique NameCN181748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181748_ssr149 microsatellite CN181748_ssr149:149..160. BLAST: Citrus ESTs to Prunus persica proteins V1
CN181748_ssr183 microsatellite CN181748_ssr183:183..200. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2281 contig Csv1_Contig2281:1..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181748 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 47/111 (42.34%), Postives = 64/111 (57.66%), Query Frame = 2
Query:  359 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNMEL 688
            +  GD G    L E+ V M C+ CVDAV + L+   GV+NVEV L NQ+V +  + P + +   LE TGR+A L G G  +   + AAVA  +G   V GVVR  Q++ EL
Sbjct:    3 SKSGDGGTMCAL-EFTVQMSCQSCVDAVHKTLKGAAGVQNVEVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLKNLGAAVAIMEGSGTVQGVVRFLQLSSEL 112          
BLAST of CN181748 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  359 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKG-PDVFGVVRLAQVNMEL 688
            +  GD G    L E+ V M C+ CVDAV + L+ V GV+NV+V L NQ+V +  + P + +   LE TGR+A L G G  +   + AAVA  +G   + GVVR  Q++ EL
Sbjct:    3 SKSGDGGTVCAL-EFAVQMSCQSCVDAVHKTLKGVAGVQNVDVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLQNLGAAVAILEGCGSIQGVVRFLQLSSEL 112          
BLAST of CN181748 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.654e-12
Identity = 47/110 (42.73%), Postives = 65/110 (59.09%), Query Frame = 2
Query:  359 TSQGDQGLPELLTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNME 685
            +  G+QG    L E+ V M C+ CVDAV++ LQ V GV++VEV L +Q+V +  + P + +   LE TGR+A L G G  +   + AAVA   GP  V GVVR  Q+  E
Sbjct:    3 SDSGNQGTLCTL-EFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPE 111          
BLAST of CN181748 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  392 LTEYMVDMKCEGCVDAVKQKLQTVTGVKNVEVDLSNQVVRILGSSPLKTMTEALEQTGRKARLVGQGVPEDFLVSAAVAEFKGP-DVFGVVRLAQVNME 685
            + E+ V M C+ CVDAV + LQ V G+++VEV L NQ+V +  + P + +   LE TGR+A L G G      + AAVA   G   V GVVR  Q+  E
Sbjct:   13 MLEFAVQMTCQSCVDAVSRSLQGVAGIQSVEVQLENQMVLVQTTLPSQVVQALLEDTGRQAVLKGMGSGRWQNLEAAVAILGGSGPVQGVVRFLQLTPE 111          
The following BLAST results are available for this feature:
BLAST of CN181748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CCS_RAT1.943e-1242.34Copper chaperone for superoxide dismutase OS=Rattu... [more]
CCS_MOUSE1.943e-1241.44Copper chaperone for superoxide dismutase OS=Mus m... [more]
CCS_HUMAN5.654e-1242.73Copper chaperone for superoxide dismutase OS=Homo ... [more]
CCS_PIG1.645e-1142.42Copper chaperone for superoxide dismutase OS=Sus s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181748 ID=CN181748; Name=CN181748; organism=Citrus sinensis; type=EST; length=690bp
GAGGAAATAACTCTCGAGTCGTGACCGGGCGCACAACAGAGGCCGCTGAA
GTAATAACTCGGCCGGAACCAAAAGCCTTAAAAAAGACTTAATATAATAA
CACGAAAAAATGGCTATTCTGAGGACAGTGGCAACGTTAGCAACAGCCAC
AACAACAACAGCAGTAGCGGCCTTTGCCTTCCCTTCTTCTTCTTCTTCTT
TTTCGTCAAAATCTCATCAACCCAAATCCCAAAATCTCTCCTTTTTCTCT
TCACAATCTCTCTCACTTCTCTATTCAAATAAATCGCCTCTTGTCAAAAA
CTTCAGCAACCCACCTTCCGCTCTTCCCATGGACGCTTCCACATCTGATC
ACAAAAACACATCCCAGGGGGATCAGGGGTTGCCTGAGCTTCTGACAGAA
TACATGGTGGACATGAAGTGTGAGGGTTGCGTTGATGCCGTCAAGCAGAA
GTTGCAGACTGTTACTGGAGTCAAGAATGTTGAGGTGGACTTGAGCAATC
AAGTTGTGAGAATTTTGGGATCTTCACCTCTGAAGACCATGACCGAAGCT
TTGGAGCAAACAGGACGAAAAGCCCGGTTAGTTGGACAAGGGGTGCCTGA
AGATTTTTTAGTCTCCGCTGCCGTTGCTGAATTCAAAGGTCCAGATGTAT
TTGGTGTGGTTCGCTTGGCTCAAGTGAATATGGAATTGGC
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