CN181648
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H18_ARATH (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.726e-51 Identity = 109/224 (48.66%), Postives = 142/224 (63.39%), Query Frame = 2 Query: 5 VRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDSDLHSFSRGCETSRFIRKXXXXXXXXXXXXXXXXXXXXXXVRKPMP-NPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLN 673 +RL+DRPHGQH+VILAEDA K++E ER++ G I+ GSRQIYLTFPAES+FTE DVS YF +YG V+DVRIPCQQKRM+GFVTFAS++TVK ILAKGNPHF+C ARVLVKPYREKS+ + M + ++++ D ++++ S +RK V K +P N Y G D K++ + AER+ YL+ LN Sbjct: 278 IRLVDRPHGQHSVILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSRSSRYLDNYKPLHGMRYGSKFIERDIEMNTLPPRVSESSRMRK-------------PFLSEPEQSVSKSLPTNYSYLGFSSDDFKLTSNAEQEEQAERLSYLLDYLN 488
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H54_ORYSJ (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica GN=Os08g0126700 PE=2 SV=2) HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46 Identity = 92/166 (55.42%), Postives = 121/166 (72.89%), Query Frame = 2 Query: 2 RVRLIDRPHGQHAVILAEDAPKYLENRNERS----DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPM-YFSPQYVDMDSDLHSFSRGCETSRFIRK 484 ++R+I+RPHGQH+V+LAEDA KY++ R D G + S QIYLTFPAESTF EDDV+NYF YGPV DVRIPCQ++RMFGFV+F S +TV IL + NPHF+CG+RVLVKPYREKSK VDR + ++S + Y P++ + D +L ++ + SR +RK Sbjct: 378 KIRVIERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRTCVDNIKSMVPYCPPRFFEFDQEL--YTAEYDASRLMRK 541
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H53_ORYSJ (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.028e-34 Identity = 74/113 (65.49%), Postives = 92/113 (81.42%), Query Frame = 2 Query: 53 EDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQER 385 ++A K++ R ER+D ++ GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D KY+++ Sbjct: 336 DEAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPD-KYRKQ 447
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H23_ORYSJ (Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica GN=Os03g0329200 PE=2 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 3.955e-34 Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 2 Query: 38 AVILA--EDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVD 424 A++LA ++A K++ R +R D ++ GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D+ +++ SP +D Sbjct: 327 ALMLAGGDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFCCMSPTGLD 459
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H22_ORYSJ (Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2 SV=2) HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34 Identity = 74/114 (64.91%), Postives = 91/114 (79.82%), Query Frame = 2 Query: 50 AEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD--RKYQ 379 +++A K++ R +R D ++ GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D RK+Q Sbjct: 340 SDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQ 453
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana GN=At3g51950 PE=1 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33 Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 2 Query: 38 AVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVD 424 A+++ ++ K R ER D + SRQIYLTFPA+S F E+DVSNYF+T+GPV DVRIP QQKRMFGFVTF +TVK ILAKGNPHFVC +RVLVKPY+EK K+ D KY+ + SP +D Sbjct: 229 ALMIGDELQKLGRWRPERIDLSAMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPD-KYRTNQTTERELSPTGLD 357
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H55_ARATH (Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis thaliana GN=At5g12440 PE=2 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31 Identity = 59/93 (63.44%), Postives = 80/93 (86.02%), Query Frame = 2 Query: 113 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERME 391 + SRQIYLTFPA+STF ++DV+ YF+ +G V DVRIP QQKRMFGFV+FA +TVK++LA+GNPHF+C +RVLVKPY+EK K++D+K Q+ ++ Sbjct: 256 SASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQ 348
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H51_ORYSJ (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica GN=Os07g0583300 PE=4 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31 Identity = 68/125 (54.40%), Postives = 86/125 (68.80%), Query Frame = 2 Query: 5 VRLIDRPHGQHAVILAEDAPKY------LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 361 +R+++R HGQ+ V+L EDA K L + D G TGS QIY+TFP S FT+DDV NYF +GPV VRIP Q+KRMFGFV+F +TV++IL+KG HF+CG RVLVK Y EKS+L Sbjct: 283 IRVVEREHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTG---TGSNQIYMTFPVHSKFTDDDVENYFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSEL 404 The following BLAST results are available for this feature:
BLAST of CN181648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN181648 ID=CN181648; Name=CN181648; organism=Citrus sinensis; type=EST; length=682bpback to top |