CN181612

Overview
NameCN181612
Unique NameCN181612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 5.154e-46
Identity = 110/215 (51.16%), Postives = 122/215 (56.74%), Query Frame = 1
Query:  142 MSTSWADXXXXXXXXXXXXXXXXXLPRPTRSTYVPPHLRNKPPTSSE--------------PPASSRESTEPAS-GPGWGSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXX-EREVNPFGDDVGAEQPV-AEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            MS SWAD                    P+R  YVPPHLRN+P  S                PP+ SR +   +  G G G G R D                            EREVNPF +D    +P   E++NT INFDAYEDIP+ETSG+NVPP VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI + GRDLMACAQTGSGKTAA
Sbjct:    1 MSASWADVADSENTGSGSSNQNS---HPSRPAYVPPHLRNRPAASEPVAPLPANDRVGYGGPPSGSRWAPGGSGVGVGGGGGYRADAGRPGSGSGYGGRGGGGWNNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAA 212          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH52_ARATH (DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana GN=RH52 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.720e-45
Identity = 94/175 (53.71%), Postives = 114/175 (65.14%), Query Frame = 1
Query:  220 RPTRSTYVPPHLRNKPPTS---SEPPASSRESTEPASGPGWGSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            RP+R+ YVPPHLR++ P+S   +  P ++       +  G+G   +                             + E NPFG+D  A+  V E+ENT INF+AYEDIP+ETSG+NVPP VNTFAEIDLGEALNLNI+RCKYVKPTPVQR+AIPI   GRDLMACAQTGSGKTAA
Sbjct:   25 RPSRTNYVPPHLRSRTPSSEFVAPSPGNNDRGGYGGANSGYGGRGQGYGGRGSGYGGRGGPVGGWNARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAA 199          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH11_ARATH (DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana GN=RH11 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.269e-44
Identity = 112/219 (51.14%), Postives = 123/219 (56.16%), Query Frame = 1
Query:  142 MSTSWADXXXXXXXXXXXXXXXXXLPRPTRSTYVPPHLRNKPPTSSEP----------------PASSRESTEPASGPGWGSGS--RPD---FXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            MS SWAD                     ++  YVPPHLRN+P   SEP                PA SR +  P+SG G  SG   R D                              EREVNPFGDD   E    E+ENTGINFDAYEDIPVETSG +VPP VNTFA+IDLG+ALNLNIRRCKYV+PTPVQRHAIPI +  RDLMACAQTGSGKTAA
Sbjct:    1 MSASWADVADSEKAVSQ-----------SKPPYVPPHLRNRP---SEPVAAPLPQNDHAGYGGQPAGSRWAP-PSSGGGGASGGGYRNDGGRTGYGYGAGGGGGGGGGWNNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAA 204          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.966e-43
Identity = 99/184 (53.80%), Postives = 112/184 (60.87%), Query Frame = 1
Query:  220 RPTRSTYVPPHLRNKPPTS-----SEPPASSRESTEPASGPGWGSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEE-------ENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            RP RS+YVPPHLRN+  +S     + PP+SS  S  P          RP                            +RE NPFG+D  A     +E       +NTGINFDAYEDIPVETSG  VPP V TFAEIDLG+ALN NIRRCKYV+PTPVQR+AIPIS+ GRDLMACAQTGSGKTAA
Sbjct:   30 RPDRSSYVPPHLRNRGASSGGGAAAPPPSSSSSSAPPPRAAPGLLAPRP-----AAAGMGRMGGGGGGGGFGGPRRWDREPNPFGNDGDAAAGAGDEPEVFDAHQNTGINFDAYEDIPVETSGREVPPPVGTFAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAA 208          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.097e-43
Identity = 103/197 (52.28%), Postives = 116/197 (58.88%), Query Frame = 1
Query:  220 RPTRSTYVPPHLRNKPPTSS------------EPPASSRES-----------TEPASGPGWGSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEE--NTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            RPTRS YVPPHLR + PT++            +P AS + S             PASG G G+   P                            +RE NPF +    E    + +  NTGINFDAYEDIPVETSG +VPP VNTFAEIDLG+ALN NIRRCKYVKPTPVQR+AIPISI GRDLMACAQTGSGKTAA
Sbjct:   33 RPTRSAYVPPHLRGQAPTTTAAPAPAPGPAAVQPSASVQPSGYAAIVGGSRWAGPASGDGTGAVGGP--RQSVGGRGGGGGGGGGWNSRPGWDRRDREPNPFANSEAEEATEVDFDTANTGINFDAYEDIPVETSGHDVPPPVNTFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAA 227          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.716e-41
Identity = 103/223 (46.19%), Postives = 117/223 (52.47%), Query Frame = 1
Query:  142 MSTSWADXXXXXXXXXXXXXXXXXLPRPTRSTYVPPHLRNKPPTSSEPPASSRESTEPAS-----------GPGWGS--------------GSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            M +SWAD                   R  RS+YVPPHLR +   ++   A +  S   A+           GP W                GSR  F                          +RE +PF +   AE    E ENTGINF+AYEDIPVETSG +VPP  NTFAEIDLG+ALN NIRRCKYVKPTPVQR+AIPISI GRDLMACAQTGSGKTAA
Sbjct:    1 MRSSWADSAANAEESAPAAAANHGNSRLPRSSYVPPHLRGQAAPAAPAQAGALPSAAAAAQPSVGQPGVVGGPRWAGIVNGGGGGGGGSVGGSRQGFGAGGRGGGGGGGGGAWNSRPGGWDRRDREPDPFANSEAAEVDF-EGENTGINFEAYEDIPVETSGHDVPPPANTFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAA 222          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25
Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 1
Query:  499 NTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            NTGINFD YEDIPVE +G+NVPP + +F ++ L E +  N+   +Y KPTPVQ+HAIPI I GRDLMACAQTGSGKTAA
Sbjct:  270 NTGINFDKYEDIPVEATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAA 348          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3Y_PANTR (ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.840e-25
Identity = 72/200 (36.00%), Postives = 95/200 (47.50%), Query Frame = 1
Query:  220 RPTRSTYVPPHLRNKPPTSS--------------EPPASSRESTEPASGPGW----GSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEE----------NTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            R ++  Y+PPHLRN+  +                +   +S  S +    PG+    GSGSR  F                                  D+    +P+   E          NTGINF+ Y+DIPVE +G N PP +  F +ID+GE +  NI+  +Y +PTPVQ+HAIPI  G RDLMACAQTGSGKTAA
Sbjct:   32 RASKGRYIPPHLRNREASKGFHDKDSSGWSCSKDKDAYNSFGSRDSRGKPGYFSERGSGSRGRFDDRGRSDYDGIGNRDRPGFGRFERNGHSRWCDKSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFGDIDMGEIIMGNIQLTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAA 231          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3Y_HUMAN (ATP-dependent RNA helicase DDX3Y OS=Homo sapiens GN=DDX3Y PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 8.554e-25
Identity = 72/198 (36.36%), Postives = 92/198 (46.46%), Query Frame = 1
Query:  226 TRSTYVPPHLRNKPPTSS--------------EPPASSRESTEPASGPGW----GSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXERE----------VNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            ++  Y+PPHLRN+  +                +   SS  S +    PG+    GSGSR  F                                         P       EQ +    NTGINF+ Y+DIPVE +G N PP +  F++ID+GE +  NI   +Y +PTPVQ+HAIPI  G RDLMACAQTGSGKTAA
Sbjct:   34 SKGRYIPPHLRNREASKGFHDKDSSGWSCSKDKDAYSSFGSRDSRGKPGYFSERGSGSRGRFDDRGRSDYDGIGNRERPGFGRFERSGHSRWCDKSVEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAA 231          
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3Y_PONAB (ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 1
Query:  475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735
            EQ +    NTGINF+ Y+DIPVE +G N PP +  F++ID+GE +  NI   +Y +PTPVQ+HAIPI  G RDLMACAQTGSGKTAA
Sbjct:  145 EQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAA 231          
The following BLAST results are available for this feature:
BLAST of CN181612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RH37_ARATH5.154e-4651.16DEAD-box ATP-dependent RNA helicase 37 OS=Arabidop... [more]
RH52_ARATH9.720e-4553.71DEAD-box ATP-dependent RNA helicase 52 OS=Arabidop... [more]
RH11_ARATH1.269e-4451.14DEAD-box ATP-dependent RNA helicase 11 OS=Arabidop... [more]
RH52C_ORYSJ6.966e-4353.80DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s... [more]
RH37_ORYSJ9.097e-4352.28DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sa... [more]
RH52B_ORYSJ1.716e-4146.19DEAD-box ATP-dependent RNA helicase 52B OS=Oryza s... [more]
DDX3_DROME2.940e-2567.09ATP-dependent RNA helicase bel OS=Drosophila melan... [more]
DDX3Y_PANTR3.840e-2536.00ATP-dependent RNA helicase DDX3Y OS=Pan troglodyte... [more]
DDX3Y_HUMAN8.554e-2536.36ATP-dependent RNA helicase DDX3Y OS=Homo sapiens G... [more]
DDX3Y_PONAB1.459e-2460.92ATP-dependent RNA helicase DDX3Y OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181612 ID=CN181612; Name=CN181612; organism=Citrus sinensis; type=EST; length=736bp
ATTTGATTTTCATCTGATTTTTCAACGAAGATTTTTGATCTGCTAGCTAA
ATAGTTAGGAAGCAAACGAGAAATTTCGATTGAGAAACGTGGAGCATTGT
GTGTTAATTGTTAAAACAAGGGGAGCTAAAATTTGGGAATTATGAGCACT
TCATGGGCTGATTCAGTGTCTGCATCTGAGAATGCGGCCCCTGCTTCTTC
TAATATCAGTGCCTTACCTCGTCCCACTCGATCCACTTATGTTCCGCCAC
ATCTCCGTAACAAGCCACCAACCTCTTCTGAACCTCCTGCTTCGTCACGA
GAATCTACTGAACCTGCCAGTGGCCCCGGCTGGGGCAGTGGTTCGAGGCC
CGATTTTGGGCGTGGTCAGGGTTACGGCTCTGGTGGTAGAAGTGGCGGTG
GTTGGAATAATAGAAGTGGGGGTTGGGACCGAAGGGAACGTGAAGTGAAC
CCGTTTGGTGATGATGTTGGTGCAGAGCAGCCGGTTGCTGAAGAAGAAAA
CACGGGTATTAATTTTGATGCTTATGAGGATATTCCAGTGGAGACAAGTG
GAGAAAATGTGCCACCGGCAGTTAATACATTTGCAGAAATTGATTTGGGG
GAAGCTTTGAATCTTAATATTAGGAGGTGCAAGTATGTCAAACCGACGCC
TGTTCAGCGTCATGCGATTCCTATATCGATTGGTGGGCGAGATTTAATGG
CCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCT
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