CN181612
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2) HSP 1 Score: 184.496 bits (467), Expect = 5.154e-46 Identity = 110/215 (51.16%), Postives = 122/215 (56.74%), Query Frame = 1 Query: 142 MSTSWADXXXXXXXXXXXXXXXXXLPRPTRSTYVPPHLRNKPPTSSE--------------PPASSRESTEPAS-GPGWGSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXX-EREVNPFGDDVGAEQPV-AEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 MS SWAD P+R YVPPHLRN+P S PP+ SR + + G G G G R D EREVNPF +D +P E++NT INFDAYEDIP+ETSG+NVPP VNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPI + GRDLMACAQTGSGKTAA Sbjct: 1 MSASWADVADSENTGSGSSNQNS---HPSRPAYVPPHLRNRPAASEPVAPLPANDRVGYGGPPSGSRWAPGGSGVGVGGGGGYRADAGRPGSGSGYGGRGGGGWNNRSGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAA 212
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH52_ARATH (DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana GN=RH52 PE=2 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 9.720e-45 Identity = 94/175 (53.71%), Postives = 114/175 (65.14%), Query Frame = 1 Query: 220 RPTRSTYVPPHLRNKPPTS---SEPPASSRESTEPASGPGWGSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 RP+R+ YVPPHLR++ P+S + P ++ + G+G + + E NPFG+D A+ V E+ENT INF+AYEDIP+ETSG+NVPP VNTFAEIDLGEALNLNI+RCKYVKPTPVQR+AIPI GRDLMACAQTGSGKTAA Sbjct: 25 RPSRTNYVPPHLRSRTPSSEFVAPSPGNNDRGGYGGANSGYGGRGQGYGGRGSGYGGRGGPVGGWNARSGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAA 199
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH11_ARATH (DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana GN=RH11 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 1.269e-44 Identity = 112/219 (51.14%), Postives = 123/219 (56.16%), Query Frame = 1 Query: 142 MSTSWADXXXXXXXXXXXXXXXXXLPRPTRSTYVPPHLRNKPPTSSEP----------------PASSRESTEPASGPGWGSGS--RPD---FXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 MS SWAD ++ YVPPHLRN+P SEP PA SR + P+SG G SG R D EREVNPFGDD E E+ENTGINFDAYEDIPVETSG +VPP VNTFA+IDLG+ALNLNIRRCKYV+PTPVQRHAIPI + RDLMACAQTGSGKTAA Sbjct: 1 MSASWADVADSEKAVSQ-----------SKPPYVPPHLRNRP---SEPVAAPLPQNDHAGYGGQPAGSRWAP-PSSGGGGASGGGYRNDGGRTGYGYGAGGGGGGGGGWNNRSGGWDRREREVNPFGDDAELEPVFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAA 204
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 6.966e-43 Identity = 99/184 (53.80%), Postives = 112/184 (60.87%), Query Frame = 1 Query: 220 RPTRSTYVPPHLRNKPPTS-----SEPPASSRESTEPASGPGWGSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEE-------ENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 RP RS+YVPPHLRN+ +S + PP+SS S P RP +RE NPFG+D A +E +NTGINFDAYEDIPVETSG VPP V TFAEIDLG+ALN NIRRCKYV+PTPVQR+AIPIS+ GRDLMACAQTGSGKTAA Sbjct: 30 RPDRSSYVPPHLRNRGASSGGGAAAPPPSSSSSSAPPPRAAPGLLAPRP-----AAAGMGRMGGGGGGGGFGGPRRWDREPNPFGNDGDAAAGAGDEPEVFDAHQNTGINFDAYEDIPVETSGREVPPPVGTFAEIDLGQALNDNIRRCKYVRPTPVQRYAIPISLAGRDLMACAQTGSGKTAA 208
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 9.097e-43 Identity = 103/197 (52.28%), Postives = 116/197 (58.88%), Query Frame = 1 Query: 220 RPTRSTYVPPHLRNKPPTSS------------EPPASSRES-----------TEPASGPGWGSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEE--NTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 RPTRS YVPPHLR + PT++ +P AS + S PASG G G+ P +RE NPF + E + + NTGINFDAYEDIPVETSG +VPP VNTFAEIDLG+ALN NIRRCKYVKPTPVQR+AIPISI GRDLMACAQTGSGKTAA Sbjct: 33 RPTRSAYVPPHLRGQAPTTTAAPAPAPGPAAVQPSASVQPSGYAAIVGGSRWAGPASGDGTGAVGGP--RQSVGGRGGGGGGGGGWNSRPGWDRRDREPNPFANSEAEEATEVDFDTANTGINFDAYEDIPVETSGHDVPPPVNTFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAA 227
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.716e-41 Identity = 103/223 (46.19%), Postives = 117/223 (52.47%), Query Frame = 1 Query: 142 MSTSWADXXXXXXXXXXXXXXXXXLPRPTRSTYVPPHLRNKPPTSSEPPASSRESTEPAS-----------GPGWGS--------------GSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 M +SWAD R RS+YVPPHLR + ++ A + S A+ GP W GSR F +RE +PF + AE E ENTGINF+AYEDIPVETSG +VPP NTFAEIDLG+ALN NIRRCKYVKPTPVQR+AIPISI GRDLMACAQTGSGKTAA Sbjct: 1 MRSSWADSAANAEESAPAAAANHGNSRLPRSSYVPPHLRGQAAPAAPAQAGALPSAAAAAQPSVGQPGVVGGPRWAGIVNGGGGGGGGSVGGSRQGFGAGGRGGGGGGGGGAWNSRPGGWDRRDREPDPFANSEAAEVDF-EGENTGINFEAYEDIPVETSGHDVPPPANTFAEIDLGDALNENIRRCKYVKPTPVQRYAIPISIAGRDLMACAQTGSGKTAA 222
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3_DROME (ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.940e-25 Identity = 53/79 (67.09%), Postives = 63/79 (79.75%), Query Frame = 1 Query: 499 NTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 NTGINFD YEDIPVE +G+NVPP + +F ++ L E + N+ +Y KPTPVQ+HAIPI I GRDLMACAQTGSGKTAA Sbjct: 270 NTGINFDKYEDIPVEATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAA 348
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3Y_PANTR (ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.840e-25 Identity = 72/200 (36.00%), Postives = 95/200 (47.50%), Query Frame = 1 Query: 220 RPTRSTYVPPHLRNKPPTSS--------------EPPASSRESTEPASGPGW----GSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXEREVNPFGDDVGAEQPVAEEE----------NTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 R ++ Y+PPHLRN+ + + +S S + PG+ GSGSR F D+ +P+ E NTGINF+ Y+DIPVE +G N PP + F +ID+GE + NI+ +Y +PTPVQ+HAIPI G RDLMACAQTGSGKTAA Sbjct: 32 RASKGRYIPPHLRNREASKGFHDKDSSGWSCSKDKDAYNSFGSRDSRGKPGYFSERGSGSRGRFDDRGRSDYDGIGNRDRPGFGRFERNGHSRWCDKSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFGDIDMGEIIMGNIQLTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAA 231
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3Y_HUMAN (ATP-dependent RNA helicase DDX3Y OS=Homo sapiens GN=DDX3Y PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 8.554e-25 Identity = 72/198 (36.36%), Postives = 92/198 (46.46%), Query Frame = 1 Query: 226 TRSTYVPPHLRNKPPTSS--------------EPPASSRESTEPASGPGW----GSGSRPDFXXXXXXXXXXXXXXXXXXXXXXXXXXERE----------VNPFGDDVGAEQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 ++ Y+PPHLRN+ + + SS S + PG+ GSGSR F P EQ + NTGINF+ Y+DIPVE +G N PP + F++ID+GE + NI +Y +PTPVQ+HAIPI G RDLMACAQTGSGKTAA Sbjct: 34 SKGRYIPPHLRNREASKGFHDKDSSGWSCSKDKDAYSSFGSRDSRGKPGYFSERGSGSRGRFDDRGRSDYDGIGNRERPGFGRFERSGHSRWCDKSVEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAA 231
BLAST of CN181612 vs. ExPASy Swiss-Prot
Match: DDX3Y_PONAB (ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24 Identity = 53/87 (60.92%), Postives = 65/87 (74.71%), Query Frame = 1 Query: 475 EQPVAEEENTGINFDAYEDIPVETSGENVPPAVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPISIGGRDLMACAQTGSGKTAA 735 EQ + NTGINF+ Y+DIPVE +G N PP + F++ID+GE + NI +Y +PTPVQ+HAIPI G RDLMACAQTGSGKTAA Sbjct: 145 EQELFSGGNTGINFEKYDDIPVEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKTAA 231 The following BLAST results are available for this feature:
BLAST of CN181612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 61
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181612 ID=CN181612; Name=CN181612; organism=Citrus sinensis; type=EST; length=736bpback to top |