CN181570
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_YEAST (Replication factor A protein 1 OS=Saccharomyces cerevisiae GN=RFA1 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18 Identity = 49/159 (30.82%), Postives = 88/159 (55.35%), Query Frame = -1 Query: 153 EKPVFFSIKTYISLIKPDQAMWYRAC--KTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 623 EK FFS+K IS +K D Y AC + CNKKV + + CE C N+ + RYI+ + D + + W+++F+++A++++G A+ L LK + D N + + + + R+ + YN++ R R TV + +++ AE+ +L +E+SK Sbjct: 462 EKGDFFSVKAAISFLKVDNFA-YPACSNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSK 617
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_SCHPO (Replication factor A protein 1 OS=Schizosaccharomyces pombe GN=ssb1 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17 Identity = 54/157 (34.39%), Postives = 86/157 (54.78%), Query Frame = -1 Query: 159 EKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEI 623 E P +FS+K I I+ Y AC CNKKV D GS + CE C K + RYI+ V D +G+ W+++F++ + I+ +ADELN+L Q D+N++ + E ++P++ + Q + E R R TV ++ +D+ ESK L+ I Sbjct: 453 ETPDYFSLKGTIVYIRKKNVS-YPACPAADCNKKVFDQGGS-WRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDL--QENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKRLINFI 605
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_PONAB (Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15 Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = -1 Query: 153 NPSLGDEKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 641 N GD+ F S+ T + L K + Y+AC T CNKKV D Y CE C R I+ + D W++ F E AE I+G +A L ELK + ++ +++ + + + RV V + YN+E R + TV V PVD+ + L+ I + Sbjct: 452 NLGQGDKPDYFSSVATVVYLRKEN--CMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRR 612
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_HUMAN (Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 2.166e-15 Identity = 52/165 (31.52%), Postives = 79/165 (47.88%), Query Frame = -1 Query: 153 NPSLGDEKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 641 N GD+ F S+ T + L K + Y+AC T CNKKV D Y CE C R I+ + D W++ F E AE I+G +A L ELK + ++ +++ + + + RV V + YN+E R + TV V PVD+ + L+ I + Sbjct: 452 NLGQGDKPDYFSSVATVVYLRKEN--CMYQACPTQDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKDK--NEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRR 612
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_XENTR (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15 Identity = 52/161 (32.30%), Postives = 78/161 (48.45%), Query Frame = -1 Query: 153 GDEKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 629 G++ F S+ T + L K + Y+AC + CNKKV D + CE C K R I+ A + D WI+ F E AE I+G +A L ELK + ++ +Y + + + R+ V + YN+E R + T V PVD S+ L+ I K Sbjct: 447 GEKADYFTSVATIVYLRKEN--CLYQACPSQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEK--NEQAYDEVFQNANFRSYTFRIRVKLETYNDESRIKATAMDVKPVDHKEYSRRLIMNIRK 603
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_MOUSE (Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.828e-15 Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -1 Query: 147 EKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISKKV 623 +K +FS + ++ + M Y+AC T CNKKV D Y CE C + R I+ A + D W++ F E AE I+G + L ELK + ++ +++ + + R+ V + YN+E R + TV V PVDF + L+ I K + Sbjct: 466 DKADYFSTVAAVVFLRKENCM-YQACPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILGQNTMYLGELKEK--NEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDYGRRLIANIRKNM 623
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_XENLA (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.075e-14 Identity = 52/161 (32.30%), Postives = 77/161 (47.83%), Query Frame = -1 Query: 153 GDEKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 629 G++ F S+ T + L K + Y+AC + CNKKV D + CE C K R I+ A + D WI+ F E AE I+G +A L ELK + ++ +Y + + + R V + YN+E R + T V PVD S+ L+ I K Sbjct: 447 GEKADYFTSVATIVYLRKEN--CLYQACPSQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKEK--NEQAYDEVFQNANFRSYTFRARVKLETYNDESRIKATAVDVKPVDHKEYSRRLIMNIRK 603
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_DROME (Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.404e-14 Identity = 43/159 (27.04%), Postives = 80/159 (50.31%), Query Frame = -1 Query: 153 EKPVFFSIKTYISLIKPDQAMWYRAC--KTCNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 623 +KP +F K + ++K + A +YRAC CNKKV D + CE C R ++ + D + W+S FNE E+++G ++ E+ E D + + + H+ ++ + Y + R ++TV++VAP++ +K LL+E+ + Sbjct: 440 DKPDYFQCKAVVHIVKQENA-FYRACPQSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEALE--NDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQE 595
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_CAEBR (Probable replication factor A 73 kDa subunit OS=Caenorhabditis briggsae GN=rpa-1 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.833e-14 Identity = 47/160 (29.38%), Postives = 89/160 (55.62%), Query Frame = -1 Query: 159 EKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVD---FAAESKFLLEEI 623 +K + S+K I+ I P+ A+ Y+ C + C KKV ++ G Y CE C K+ + Y+M + D +G+ +++ F + A +++G +A E+ +LK + + N Y + + +VP + R+ + YN E RQ++TV +V V+ + K L+E++ Sbjct: 494 DKGDYASVKAMITRINPNSAL-YKGCASEGCQKKVIESDGE-YRCEKCNKSMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKVVGKTAQEVGDLKDE--NLNEYNATFERLQFVPKMWRLRCKMETYNEEVRQKMTVFSVEEVNQDKYIENLKELIEQM 649
BLAST of CN181570 vs. ExPASy Swiss-Prot
Match: RFA1_CHICK (Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.099e-14 Identity = 47/161 (29.19%), Postives = 79/161 (49.07%), Query Frame = -1 Query: 153 GDEKPVFFSIKTYISLIKPDQAMWYRACKT--CNKKVTDALGSGYWCEGCQKNDEECSLRYIMVARVCDGSGEAWISIFNEEAERIIGCSADELNELKSQLGDDNSYQMKLKEVTWVPHLLRVSVAQQEYNNEKRQRVTVRAVAPVDFAAESKFLLEEISK 629 GD+ F + T + L K + Y+AC + CNKKV D Y CE C + R +++ + D W++ F E AE I+G SA L ELK + ++ +++ + + + ++ V + YN+E R + T V PV++ SK L+ I + Sbjct: 453 GDKADYFSCVGTIVHLRKEN--CMYQACPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKDK--NEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLIASIRR 609 The following BLAST results are available for this feature:
BLAST of CN181570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181570 ID=CN181570; Name=CN181570; organism=Citrus sinensis; type=EST; length=644bpback to top |