CN181554

Overview
NameCN181554
Unique NameCN181554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11607 contig Csv1_Contig11607:247..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_XENLA (RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.830e-63
Identity = 117/167 (70.06%), Postives = 143/167 (85.63%), Query Frame = -3
Query:  291 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 791
            ++GKAEI+PGVLFIDEVHMLD+ECFSFLNRALE++MAP+L++ATNRGITRIRGTNY+S HGIP+DLLDRLLIIST PY   E ++IL IRC+EEDV+M+EDA  +LTR+G  TSLRY++ LITAA+L  +KRKG  V+V DI RVY LFLD  RSTQY+ EYQ  ++
Sbjct:  284 EEGKAEIIPGVLFIDEVHMLDIECFSFLNRALESDMAPVLIMATNRGITRIRGTNYQSPHGIPIDLLDRLLIISTSPYNEKETKQILKIRCEEEDVDMSEDAYTVLTRIGLETSLRYSMQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFM 450          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_DICDI (RuvB-like helicase 2 OS=Dictyostelium discoideum GN=rvb2 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.122e-63
Identity = 116/167 (69.46%), Postives = 146/167 (87.43%), Query Frame = -3
Query:  291 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 791
            ++GKAEIVPGVLFIDEVHMLD+ECFS+LNRALE++M+PIL++ATNRG T IRGT+YK+ HGIP+DLLDRLLII+T+PYT  +I KIL IRC+EEDV++ EDA QLLT++G  TSLRYAIHLIT+++L S KRKG  V V DI +VY LF+DV+RST+YL +YQ +Y+
Sbjct:  281 EEGKAEIVPGVLFIDEVHMLDIECFSYLNRALEDDMSPILIIATNRGNTTIRGTDYKAPHGIPLDLLDRLLIINTQPYTEKDIYKILKIRCEEEDVDIQEDALQLLTKIGVETSLRYAIHLITSSSLVSVKRKGTDVSVDDIKKVYDLFVDVKRSTKYLKDYQDEYL 447          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_DANRE (RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.550e-62
Identity = 114/177 (64.41%), Postives = 147/177 (83.05%), Query Frame = -3
Query:  261 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINEVTIEADED 791
            ++GKAEI+PGVLFIDEVHMLD+ECFSFLNRALE++++P+L++ATNRGITRIRGTNY+S HGIP+D+LDRLLII+T PYT  E R+IL IRC+EEDVE++E+A  +LTR+G+ TSLRYAI LI+ A L  +KR+G  V+V+DI RVY LFLD  RS+QY+ EYQ  ++   T  +  D
Sbjct:  285 EEGKAEIIPGVLFIDEVHMLDIECFSFLNRALESDLSPVLIMATNRGITRIRGTNYQSPHGIPIDMLDRLLIIATTPYTEKETRQILKIRCEEEDVELSEEAHTVLTRIGQETSLRYAIQLISTAGLVCRKRRGTEVQVEDIKRVYSLFLDEARSSQYMKEYQDSFLFNETQTSQMD 461          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_MOUSE (RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=2 SV=3)

HSP 1 Score: 239.195 bits (609), Expect = 2.024e-62
Identity = 116/167 (69.46%), Postives = 143/167 (85.63%), Query Frame = -3
Query:  291 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 791
            ++GKAEI+PGVLFIDEVHMLD+E FSFLNRALE++MAP+L++ATNRGITRIRGT+Y+S HGIP+DLLDRLLI+ST PY+  + ++IL IRC+EEDVEM+EDA  +LTR+G  TSLRYAI LITAA+L  +KRKG  V+V DI RVY LFLD  RSTQY+ EYQ  ++
Sbjct:  285 EEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFL 451          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_HUMAN (RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 2.643e-62
Identity = 116/167 (69.46%), Postives = 143/167 (85.63%), Query Frame = -3
Query:  291 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 791
            ++GKAEI+PGVLFIDEVHMLD+E FSFLNRALE++MAP+L++ATNRGITRIRGT+Y+S HGIP+DLLDRLLI+ST PY+  + ++IL IRC+EEDVEM+EDA  +LTR+G  TSLRYAI LITAA+L  +KRKG  V+V DI RVY LFLD  RSTQY+ EYQ  ++
Sbjct:  285 EEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFL 451          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_BOVIN (RuvB-like 2 OS=Bos taurus GN=RUVBL2 PE=2 SV=3)

HSP 1 Score: 238.424 bits (607), Expect = 3.452e-62
Identity = 116/167 (69.46%), Postives = 143/167 (85.63%), Query Frame = -3
Query:  291 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI 791
            ++GKAEI+PGVLFIDEVHMLD+E FSFLNRALE++MAP+L++ATNRGITRIRGT+Y+S HGIP+DLLDRLLI+ST PY+  + ++IL IRC+EEDVEM+EDA  +LTR+G  TSLRYAI LITAA+L  +KRKG  V+V DI RVY LFLD  RSTQY+ EYQ  ++
Sbjct:  285 EEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTSPYSEKDKKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFL 451          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_SCHPO (RuvB-like helicase 2 OS=Schizosaccharomyces pombe GN=rvb2 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.024e-58
Identity = 111/184 (60.33%), Postives = 145/184 (78.80%), Query Frame = -3
Query:  246 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI--NEVTIEADEDDANAM 791
            ++GKAEIVPGVLF+DEVHMLD+ECFSF NRALE+++API+++A+NRGITRIRGTNY+S HGIP+DLLDR+LIIST PY+ +E+++IL IRCQEEDV+M   A   L+ +G+ TSLRYA+ LI+++   + KRK   +E  DI RVY LFLD +RS +YL EY   YI  NE +    +D+A AM
Sbjct:  279 EEGKAEIVPGVLFVDEVHMLDIECFSFFNRALEDDLAPIVIMASNRGITRIRGTNYRSPHGIPVDLLDRMLIISTLPYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSLRYALLLISSSNQVALKRKSATIEESDIRRVYELFLDQKRSVEYLEEYGKNYITENEWSASGAQDNAVAM 462          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_DROME (RuvB-like helicase 2 OS=Drosophila melanogaster GN=rept PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.950e-58
Identity = 111/180 (61.67%), Postives = 141/180 (78.33%), Query Frame = -3
Query:  255 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYI-NEVTIEADEDDA 791
            ++GKAEI PGVLFIDEVHMLD+ECFSFLNRALE++MAP++V+ATNRGITRIRGTNY+S HGIP+DLLDR++II T PY+  E+++IL IRC+EED  M  DA  +LTR+   TSLRYAI LIT A L  ++RK   V  +D+ +VY LFLD  RS++ L EYQ  Y+ +E+T E + D A
Sbjct:  281 EEGKAEINPGVLFIDEVHMLDIECFSFLNRALESDMAPVVVMATNRGITRIRGTNYRSPHGIPIDLLDRMIIIRTVPYSEKEVKEILKIRCEEEDCIMHPDALTILTRIATDTSLRYAIQLITTANLVCRRRKATEVNTEDVKKVYSLFLDENRSSKILKEYQDDYMFSEITEEVERDPA 460          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_USTMA (RuvB-like helicase 2 OS=Ustilago maydis GN=RVB2 PE=3 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.149e-57
Identity = 110/184 (59.78%), Postives = 145/184 (78.80%), Query Frame = -3
Query:  240 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINEVTIEADEDDANAMVP 791
            ++GKAEIVPGVLFIDEVHMLD+ECFSFLNRALE+E+AP++++A+NRGI RIRGT ++S HGIP+DLLDR+LIISTKPY   ++++IL IR  EE+V +  +A ++LTR+   TSLRYAI+LIT A LA+++RK   VEV D+ RVY LF+D +RS QYL E+  Q++NE     D D  N+  P
Sbjct:  280 EEGKAEIVPGVLFIDEVHMLDIECFSFLNRALESELAPLVIMASNRGICRIRGTRFRSPHGIPIDLLDRVLIISTKPYELADLKQILTIRAAEEEVSLKPEALEVLTRMASETSLRYAINLITTANLAAKRRKADEVEVADVRRVYNLFVDEKRSVQYLKEHAEQFMNESDEYGDIDGLNSGAP 463          
BLAST of CN181554 vs. ExPASy Swiss-Prot
Match: RUVB2_ASHGO (RuvB-like helicase 2 OS=Ashbya gossypii GN=RVB2 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.501e-57
Identity = 111/185 (60.00%), Postives = 145/185 (78.38%), Query Frame = -3
Query:  246 KKGKAEIVPGVLFIDEVHMLDVECFSFLNRALENEMAPILVVATNRGITRIRGTNYKSAHGIPMDLLDRLLIISTKPYTRDEIRKILDIRCQEEDVEMAEDAKQLLTRVGEGTSLRYAIHLITAAALASQKRKGKVVEVQDIDRVYRLFLDVQRSTQYLMEYQSQYINE---VTIEADEDDANAM 791
            ++GKAEIVPGVLFIDEVHMLD+ECFSF+NRALE+E API+++ATNRGI++ RGTNYKS HG+P+DLLDR +II+T+ Y+  EI+ IL IR QEE+VE+ EDA  LLT++G  TSLRY+ +LI  +   +QKRK   V+VQD+ R Y LFLD  RS +YL EY+S+YI++   V I     +A+AM
Sbjct:  281 EEGKAEIVPGVLFIDEVHMLDIECFSFINRALEDEFAPIVIMATNRGISKTRGTNYKSPHGLPLDLLDRSIIITTQNYSEQEIKTILSIRSQEEEVELTEDALDLLTKIGGETSLRYSSNLIAVSQQIAQKRKSSSVDVQDVKRAYLLFLDSTRSAKYLQEYESRYIDDHGRVDISTTGRNADAM 465          
The following BLAST results are available for this feature:
BLAST of CN181554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RUVB2_XENLA1.830e-6370.06RuvB-like 2 OS=Xenopus laevis GN=ruvbl2 PE=2 SV=1[more]
RUVB2_DICDI3.122e-6369.46RuvB-like helicase 2 OS=Dictyostelium discoideum G... [more]
RUVB2_DANRE1.550e-6264.41RuvB-like 2 OS=Danio rerio GN=ruvbl2 PE=1 SV=1[more]
RUVB2_MOUSE2.024e-6269.46RuvB-like 2 OS=Mus musculus GN=Ruvbl2 PE=2 SV=3[more]
RUVB2_HUMAN2.643e-6269.46RuvB-like 2 OS=Homo sapiens GN=RUVBL2 PE=1 SV=3[more]
RUVB2_BOVIN3.452e-6269.46RuvB-like 2 OS=Bos taurus GN=RUVBL2 PE=2 SV=3[more]
RUVB2_SCHPO3.024e-5860.33RuvB-like helicase 2 OS=Schizosaccharomyces pombe ... [more]
RUVB2_DROME3.950e-5861.67RuvB-like helicase 2 OS=Drosophila melanogaster GN... [more]
RUVB2_USTMA1.149e-5759.78RuvB-like helicase 2 OS=Ustilago maydis GN=RVB2 PE... [more]
RUVB2_ASHGO1.501e-5760.00RuvB-like helicase 2 OS=Ashbya gossypii GN=RVB2 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001B22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181554 ID=CN181554; Name=CN181554; organism=Citrus sinensis; type=EST; length=802bp
CTTTTTTCAAAATTATAACGCTGGGGAATCGCCGGAGCCTGTCACATAAT
TAACAAACCAATATCTTTCCAACTGTAGCATACCGGAAGGTGGAAAGATC
CACAACTATTTAAACCAAAACACGTGCCACATATGTATGGATAAAGCATA
GCTAAATGTTGCAAGTACTGGCAATAACTACAATTAACAAGGCGAGATTG
ATGCATAATCGCAACATCTCAAGTCTGGAGTAACTATTCTGGGACCATGG
CATTGGCATCATCTTCATCAGCTTCTATTGTCACTTCATTGATGTACTGA
CTCTGGTATTCCATCAAATACTGAGTTGATCTCTGTACATCCAAAAATAG
ACGGTAGACGCGATCAATGTCCTGAACTTCCACAACTTTTCCTTTCCGTT
TCTGAGATGCCAATGCAGCAGCTGTTATAAGATGGATGGCATATCTCAAG
GATGTTCCTTCCCCAACACGGGTCAACAATTGCTTTGCATCTTCAGCCAT
CTCCACATCTTCCTCCTGGCATCTGATATCTAGAATTTTGCGAATTTCAT
CCCTAGTATAGGGTTTAGTAGAGATGATGAGTAGGCGATCAAGAAGATCC
ATCGGAATCCCATGAGCAGATTTGTAGTTTGTGCCCCTGATTCTAGTGAT
CCCTCTGTTGGTAGCAACAACTAAAATTGGAGCCATCTCATTCTCCAGAG
CACGATTCAGGAAGGAAAAGCACTCGACGTCAAGCATGTGCACCTCATCA
ATAAAGAGGACACCTGGCACAATCTCTGCCTTTCCTTTCTTCCCTCCACT
CT
back to top