CN188554

Overview
NameCN188554
Unique NameCN188554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9880 contig Csv1_Contig9880:590..1338. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 5.483e-51
Identity = 94/112 (83.93%), Postives = 106/112 (94.64%), Query Frame = -3
Query:  412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747
            KRPYGVGLLV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER+FE+F ES++EDLIKDA+MAIRETLQGETLKSS+CTV+V+G  EPFH LDQE++QK+ID+FE
Sbjct:  125 KRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEPFHFLDQESIQKVIDTFE 236          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 5.483e-51
Identity = 93/112 (83.04%), Postives = 105/112 (93.75%), Query Frame = -3
Query:  412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747
            KRPYGVGLLV GLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE+F +S+REDLIKDA++A+RETLQGETLKSS+CTVA++G  EPFH LDQE +QK+ID+FE
Sbjct:  125 KRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFESFGDSSREDLIKDAILAVRETLQGETLKSSLCTVAILGVDEPFHFLDQEAIQKVIDTFE 236          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.653e-42
Identity = 86/119 (72.27%), Postives = 98/119 (82.35%), Query Frame = -3
Query:  406 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV-----GAGEPFHILDQETVQKLIDSFEIA 747
            KRPYGVGLLVAGLDE GAHLYYNCPSGNYFEYQAFAIGSRSQAAKT+LERRFE +++ T E LIKDAL AI+ETLQGE L SS CTVA+V     G  EPF ++D + +Q++IDS E A
Sbjct:  125 KRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEIIDSMEAA 243          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.824e-28
Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = -3
Query:  412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQG--ETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747
            +RPYGVGLLVAG D+ GAH+Y  CPSGN+++Y++ +IGSRSQ+AKTYLE+ FE+F E T E LI   L A+RET+    +TL S   ++ +VG G+PF I+++   Q  ++  E
Sbjct:  125 RRPYGVGLLVAGYDQLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIVGEGQPFKIIEEADAQPYLNLLE 238          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.663e-23
Identity = 54/114 (47.37%), Postives = 77/114 (67.54%), Query Frame = -3
Query:  409 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAI-RETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEI 747
            KRP+GVGLL+AG D  G HLY+  PSG+ F+++A A+G RSQAA+TYLE+ FE+F +   ++LI  AL A+   T  G  L     T+A+VG G PF +L +E  +K +D F++
Sbjct:  126 KRPFGVGLLIAGYDSTGPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKALAAATSGGAELNIKNTTIAIVGKGTPFMVLTEEAARKYLDGFKM 239          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.078e-22
Identity = 51/113 (45.13%), Postives = 72/113 (63.72%), Query Frame = -3
Query:  412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747
            +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E   ++L+K  L A+RETL  E  L +   ++ +VG    F I D + V   +D  E
Sbjct:  125 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLE 237          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.135e-22
Identity = 50/113 (44.25%), Postives = 72/113 (63.72%), Query Frame = -3
Query:  412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747
            +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F +   ++L+K  L A+RETL  E  L +   ++ +VG    F I D + V   +D  E
Sbjct:  125 RRPYGVGLLIAGYDDMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLE 237          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.348e-22
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = -3
Query:  412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747
            +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  E
Sbjct:  125 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.348e-22
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = -3
Query:  412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747
            +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  E
Sbjct:  125 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237          
BLAST of CN188554 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.348e-22
Identity = 50/113 (44.25%), Postives = 71/113 (62.83%), Query Frame = -3
Query:  412 KRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 747
            +RPYGVGLL+AG D+ G H++  CPS NYF+ +A +IG+RSQ+A+TYLER    F E    +L+K  L A+RETL  E  L +   ++ +VG    F I D + V   ++  E
Sbjct:  125 RRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237          
The following BLAST results are available for this feature:
BLAST of CN188554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
PSA1B_ARATH5.483e-5183.93Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA1A_ARATH5.483e-5183.04Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
PSA1_ORYSJ4.653e-4272.27Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA1_DICDI3.824e-2850.88Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA1_TRYCR1.663e-2347.37Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA1_MOUSE1.078e-2245.13Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_RAT3.135e-2244.25Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA1_MACFA5.348e-2244.25Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA1_HUMAN5.348e-2244.25Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]
PSA1_BOVIN5.348e-2244.25Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188554 ID=CN188554; Name=CN188554; organism=Citrus sinensis; type=EST; length=749bp
CTTTTACGAATNAACTAATACACAAGACAAAATGTCATTTTCGGGTTCCC
CTTTTGTATCTAAAGTGTTAAAGCAAGATGTTTGGAGTTCCCTAAAGGAT
ACTATTAAAATGTTTGTACTGATAAGGCAAGATAATTTGCACCATAAGCG
GAAAAATAAATTGTCCAACAGAATGATTTCCCGAAGTGCAACCCATATTC
CGTGGAACCCATCAAACACATGCTTAAACTCCTCATCTAAAGACGAAGAC
GAAGAAGCTGACTTCTGGTCCTTGCATCCTCAAATGTCCATTGGAGCTAC
ACCCTCGCCTGCTGGAGCACCTTGTTCTGAAGCTGCGCCTCCTTCTGCAG
CACTGCCTCCTTCTGCAGCACTATCTGGTGCAGCAGCAGGACCCTCTTCA
GTGCCAGCAATCTCAAATGAATCAATTAACTTTTGTACGGTTTCTTGATC
TAAAATATGAAATGGCTCCCCAGCTCCTACCACAGCAACTGTGCAAATAG
AACTCTTTAGTGTTTCTCCTTGTAAGGTTTCCCTTATTGCCATGAGAGCG
TCCTTGATCAGATCTTCTCTTGTAGATTCTGAAAAGTTCTCAAACCTGCG
TTCCAAGTATGTCTTTGCAGCTTGAGATCGGGACCCAATGGCAAATGCTT
GATACTCAAAATAGTTCCCACTTGGGCAGTTATAATAAAGGTGGGCTCCT
TTTTCATCCAAGCCAGCAACCAGCAGGCCAACACCATATGGCCGTTTCC
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