CX300696
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_ARATH (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Arabidopsis thaliana GN=At1g61700 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 1.562e-24 Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245 MI+PVRCFTCGKVIGNK+D YL+LL +Y+ DAL+ LGL RYCCRRM++THVDLI+KLLNYNTM+ Sbjct: 1 MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTME 66
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_BRANA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 7.754e-24 Identity = 49/66 (74.24%), Postives = 58/66 (87.88%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245 MIIPVRCFTCGKVIGNK+D YLDLL +Y+ DAL+ L L RYCCRRM++THVDLI+KLLNYNT++ Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLLNYNTLE 66
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_CAEEL (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Caenorhabditis elegans GN=Y37E3.3 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.238e-21 Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245 MIIP+RCFTCGKVIG+K++ YL L +EYS DAL+ LGL RYCCRRM+L HVDLI+KLLNY+ ++ Sbjct: 1 MIIPIRCFTCGKVIGDKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEKLLNYHPLE 66
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_MOUSE (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Mus musculus GN=Polr2l PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.112e-21 Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245 MIIPVRCFTCGK++GNK++ YL LL EY+ DAL+ LGL RYCCRRM+L HVDLI+KLLNY ++ Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLE 66
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_HUMAN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Homo sapiens GN=POLR2L PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.112e-21 Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245 MIIPVRCFTCGK++GNK++ YL LL EY+ DAL+ LGL RYCCRRM+L HVDLI+KLLNY ++ Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLE 66
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_CHILA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Chinchilla lanigera GN=POLR2L PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.112e-21 Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245 MIIPVRCFTCGK++GNK++ YL LL EY+ DAL+ LGL RYCCRRM+L HVDLI+KLLNY ++ Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLE 66
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus GN=POLR2L PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 2.112e-21 Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245 MIIPVRCFTCGK++GNK++ YL LL EY+ DAL+ LGL RYCCRRM+L HVDLI+KLLNY ++ Sbjct: 1 MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLLNYAPLE 66
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_DROME (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Drosophila melanogaster GN=Rpb10 PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.758e-21 Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTMQ 245 MIIP+RCFTCGKVIGNK++ YL LL EY+ DAL+ LGL RYCCRRM+L HVDLI+KLLNY ++ Sbjct: 1 MIIPIRCFTCGKVIGNKWESYLGLLQAEYTEGDALDALGLKRYCCRRMLLGHVDLIEKLLNYAPLE 66
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum GN=polr2l PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.758e-21 Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTM 242 MIIPVRCFTCGKVIGNK+D YL LL +Y+ DAL+ L L RYCCRRM+LTHVDLI+KLLNY + Sbjct: 1 MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLLNYTPL 65
BLAST of CX300696 vs. ExPASy Swiss-Prot
Match: RPAB5_SCHPO (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Schizosaccharomyces pombe GN=rpb10 PE=1 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 3.982e-20 Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 3 Query: 48 MIIPVRCFTCGKVIGNKYDWYLDLLVNEYSAKDALNELGLTRYCCRRMILTHVDLIQKLLNYNTM 242 MIIP+RCF+CGKVIG+K+D YL LL + + +AL++LGL RYCCRRMILTHVDLI+KLL YN + Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLLCYNPL 65 The following BLAST results are available for this feature:
BLAST of CX300696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 38
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300696 ID=CX300696; Name=CX300696; organism=Citrus sinensis; type=EST; length=412bpback to top |