CN188528
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 277.33 bits (708), Expect = 7.017e-74 Identity = 144/202 (71.29%), Postives = 161/202 (79.70%), Query Frame = -2 Query: 204 PPLQIFYLNYQGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 809 P + YL Y GIP QAE+ PVA+AP G+ A + + GPNANPL+LFPQG+P +GA GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV+ GE N+ +QL MPQ++ VTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED Sbjct: 179 PERAVEYL-YSGIPAQAEIPPVAQAPATGEQAANPLAQPQQAAAPAAATGGPNANPLNLFPQGMPAADAGA-GAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 271.937 bits (694), Expect = 2.948e-72 Identity = 151/207 (72.95%), Postives = 165/207 (79.71%), Query Frame = -2 Query: 204 PPLQIFYLNYQGIPEQAEVQPVARAPGN-GQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--EGNLGDQLAGLM--PQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 809 P + YL Y GIPEQAEV PVAR P + GQ AN +SGPNANPLDLFPQGLP+VG G GAG+LDFLRNS QFQ LRAMVQANPQ+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+GG GNL Q+A M PQ+IQVT EEREAIERLEAMGF+RA+VLEVFFACNKNEELAANYLLDHMHEFE+ Sbjct: 218 PERAVEYL-YTGIPEQAEVPPVARPPASAGQPANPPAQTQQPAAAP---ASGPNANPLDLFPQGLPNVG-GNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59 Identity = 123/205 (60.00%), Postives = 151/205 (73.66%), Query Frame = -2 Query: 204 PPLQIFYLNYQGIPEQAE--VQPVARAPGNGQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG-GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 809 P + YL Y G+PEQ + V P + P N A+ SSGPNA+PLDLFPQ LP+ + AAG G+LD LRN+ QF+ L ++VQANPQ+LQP+LQELGKQNPQ+++LIQE+QA+FL LINEP +G E NL DQ MPQ+I VTPEE EAI RLEAMGFDRA+VL+VFFACNK+E+LAANYLLDHM+EF+D Sbjct: 189 PERAVEYL-YSGVPEQMDIPVPPPSIQPANPTQASQATQPAAPSIL----SSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 208.379 bits (529), Expect = 4.003e-53 Identity = 115/207 (55.56%), Postives = 147/207 (71.01%), Query Frame = -2 Query: 204 PPLQIFYLNYQGIPEQAEVQ---PVARAPGNGQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 809 P + YL Y GIP+ AEV P A+ G+G A + S GPN++PLDLFPQ +G+ G+L+FLRN+ QFQ LR MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G GEG++ DQ MP +I VTP E+EAI+RLEAMGFDRA+V+E F AC++NEELAANYLL++ +FED Sbjct: 179 PERAVDYL-YSGIPQTAEVAVPVPEAQIAGSGAAPVAPA------------SGGPNSSPLDLFPQETV-AAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 202.601 bits (514), Expect = 2.196e-51 Identity = 113/206 (54.85%), Postives = 142/206 (68.93%), Query Frame = -2 Query: 204 PPLQIFYLNYQGIPEQAEVQPVARAPGNGQAANSXXXXXXXXXXXXXTSSGPNANPLDLFPQGLPDVGSGAAGA--GSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 809 P + YL Y GIPE + P G G S GPN++PLDLFPQ + S AAG G+L+FLR + QFQ LR+MV +NPQ+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G +G++ DQ MP S+ VTPEE+E+IERLEAMGFDRAIV+E F +C++NEELAANYLL+H +FED Sbjct: 177 PERAVDYL-YSGIPETVTI-PATNLSGVGSGRE---------LTAPPPSGGPNSSPLDLFPQ---EAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 7.346e-31 Identity = 65/134 (48.51%), Postives = 95/134 (70.90%), Query Frame = -2 Query: 228 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 599 ++G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ GG G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL Sbjct: 270 SSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 9.594e-31 Identity = 65/134 (48.51%), Postives = 94/134 (70.15%), Query Frame = -2 Query: 228 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 599 ++G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ GG G + + G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL Sbjct: 269 SSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 8.122e-30 Identity = 65/139 (46.76%), Postives = 94/139 (67.63%), Query Frame = -2 Query: 228 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 596 +G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ GG G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.061e-29 Identity = 65/140 (46.43%), Postives = 94/140 (67.14%), Query Frame = -2 Query: 228 AGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ-----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 596 +G L+FLRN PQFQ +R ++Q NP LL +LQ++G++NPQL++ I +HQ F++++NEPVQ GG G + + +G M IQVTP+E+EAIERL+A+GF +V++ +FAC KNE LAAN+LL Sbjct: 271 SGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.385e-29 Identity = 65/140 (46.43%), Postives = 96/140 (68.57%), Query Frame = -2 Query: 207 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 599 AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL + E Sbjct: 226 AAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363 The following BLAST results are available for this feature:
BLAST of CN188528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188528 ID=CN188528; Name=CN188528; organism=Citrus sinensis; type=EST; length=822bpback to top |