CN188519

Overview
NameCN188519
Unique NameCN188519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188519_ssr525 microsatellite CN188519_ssr525:525..534. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2671 contig Csv1_Contig2671:1..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 80/133 (60.15%), Postives = 88/133 (66.17%), Query Frame = 1
Query:   55 MSLISNMLGDNN----------EPFDPFLSLV-------NKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            MSLI  + GD            + FDPF  L              NT  DWKETPEAHVF ADLPGLKK+EVKVEV+E RVLQISGER  + E   DTWHRVER  G+FMRRF+LPENAK D+VKASMENGVL
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPFKELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVL 133          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.218e-33
Identity = 70/111 (63.06%), Postives = 84/111 (75.68%), Query Frame = 1
Query:   91 EPFDPFLS--LVNK-----CPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            +PF+ FL+  L N          N   DW+ETPEAHVF AD+PGLKK+EVKVEV++G +LQISGER ++ E   DTWHRVER  G+FMRRF+LPENAK +EVKASMENGVL
Sbjct:   25 DPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVL 135          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.591e-33
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = 1
Query:   91 EPFDPFLSLVNKCP------VLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            + +DPF  +++  P      ++N   DWKETPEAHV  ADLPG+KK+EVKVEV++GRVLQISGER  + E   DTWHRVER  G+F+RRF+LPENAK DEVKA MENGVL
Sbjct:   22 DTWDPFQGIISTEPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVL 131          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.077e-33
Identity = 77/133 (57.89%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   55 MSLISNMLGDN-NEPFDPF----------------LSLVNKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            MSLI ++ G   +  FDPF                LS  N   V NT  DWKETPEAHVF AD+PGLKK+EVKV++++ RVLQISGER  + E   DTWHRVER  G FMRRF+LPENAK ++VKASMENGVL
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSAENSAFV-NTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVL 132          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.713e-33
Identity = 76/133 (57.14%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   55 MSLISNMLGDNN----------EPFDPFLSLV-------NKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            MSLI  + GD            + FDPF  L              NT  DWKETPE HVF  DLPGLKK+EVKVEV+E RVLQISGER  + E   D WHR+ER  G+FMRRF+LPENAK D+VKASMENGVL
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPSTNSGESSAFANTRIDWKETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVL 133          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.543e-33
Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   94 PFDPFLSLVNKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            PF   LS  N   V +T  DWKETPEAHVF AD+PGLKK+EVK+E+ +GRVLQISGER  + E   DTWHRVER  G+ +RRF+LPENAK D+VKASMENGVL
Sbjct:   31 PFPSSLSAENSAFV-STRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVL 132          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.031e-32
Identity = 77/133 (57.89%), Postives = 85/133 (63.91%), Query Frame = 1
Query:   55 MSLISNMLGDNN----------EPFDPFLSLV-------NKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            MSLI  + GD            + FDPF  L              NT  DWKETPEAHVF ADLPGLK +EVKVEV+E RVLQISGER  + E   D W RVER  G+FMRRF+LPENAK D+VKASMENGVL
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVL 133          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.759e-32
Identity = 74/140 (52.86%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   55 MSLISNMLGDN-NEPFDPFLSLV-----------------------NKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            MSLI N  G   N  FDPF   V                            ++T  DWKETPEAHVF AD+PGLKK+EVKV++++ +VLQISGER  + E   DTWHRVER  G+FMRRF+LPENAK ++VKASMENGVL
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVL 140          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.297e-32
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 1
Query:  136 LNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            ++T  DWKETPEAHVF ADLPGLKK+EVKVEV++ RVLQISGER  + E   D WHRVER  G+F+RRF+LPENAK D+VKASMENGVL
Sbjct:   49 VSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVL 137          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32
Identity = 64/89 (71.91%), Postives = 75/89 (84.27%), Query Frame = 1
Query:  136 LNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            ++T  DWKETPEAHVF ADLPGLKK+EVKVE+++ RVLQISGER  + E   D WHRVER  G+FMRRF+LPENAK D+VKA+MENGVL
Sbjct:   34 VSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVL 122          
The following BLAST results are available for this feature:
BLAST of CN188519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HSP12_SOLPE2.899e-3560.1517.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP17_ARATH1.218e-3363.0617.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_HELAN1.591e-3362.7317.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP13_SOYBN2.077e-3357.8917.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLLC2.713e-3357.1417.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP11_SOYBN3.543e-3366.9917.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLPE1.031e-3257.8917.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP16_SOYBN1.759e-3252.8618.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA2.297e-3273.0318.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP11_MEDSA3.000e-3271.9118.1 kDa class I heat shock protein (Fragment) OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006D08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188519 ID=CN188519; Name=CN188519; organism=Citrus sinensis; type=EST; length=613bp
CCTTATAATCTGAAATCAGAAGCTAGCATATATCAATATCCTTGGTAACT
AGAAATGTCTCTCATTTCCAACATGTTGGGTGACAACAATGAGCCATTTG
ATCCATTCCTTTCACTGGTGAACAAGTGTCCGGTGCTCAACACGCCGACA
GACTGGAAAGAAACCCCAGAAGCCCACGTGTTCACCGCTGATCTTCCGGG
GCTGAAGAAAGATGAGGTCAAAGTTGAAGTTGACGAAGGCAGAGTCTTGC
AAATAAGCGGAGAGAGGAAAGCGGACGGCGAGAGTGATGGTGATACGTGG
CATAGGGTGGAACGGTGTCGTGGCAGGTTCATGAGGAGGTTTAAGCTGCC
GGAAAATGCGAAGACCGATGAAGTGAAGGCGTCCATGGAGAATGGAGTGC
TTGTGGTCAAAATACCAAAGCAAGAAGTCAAGAAACCGGAGAAGAAAGTG
ATTGAGATTCAGGGGAACTGAGGGTTTAATCAAATTAAGTTGATAGTGTG
TTGCTGAAATAAATCGTCTTACGTTGTGTGTGTGTTTGGTGTAATCAAGT
GTGATTCTTATTATTAATTTTTTTTTTTTCCCNATTAGCTTTTGTGTTCA
TGCATCCTTCTTG
back to top