CN188515

Overview
NameCN188515
Unique NameCN188515
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6144 contig Csv1_Contig6144:22..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188515 vs. ExPASy Swiss-Prot
Match: KICH_SCHPO (Putative choline kinase OS=Schizosaccharomyces pombe GN=SPAC13G7.12c PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.829e-15
Identity = 45/131 (34.35%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  198 LQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKAL----LWDRLRKWVSVA 578
            L +  + GA+TN VY +A P   +  A  +L+RIYG  VE+F NR  E+   + ++    GP L+G F +GR E+++ + TL+   IRDPK+S  V  ++ E H+  +  P + L     W     W+  A
Sbjct:   63 LHIKRISGALTNAVYYVAPPEGYH--APKLLLRIYGPHVELFINRQVELENLKRLARHNIGPYLIGEFSNGRFEQYMESTTLTCKTIRDPKLSIYVGRRLCELHNFILLHPHEVLEMPAAWKNCLVWLPKA 191          
BLAST of CN188515 vs. ExPASy Swiss-Prot
Match: CHKB_MOUSE (Choline/ethanolamine kinase OS=Mus musculus GN=Chkb PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 45/163 (27.61%), Postives = 86/163 (52.76%), Query Frame = 3
Query:  192 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRKWVSVAXSF--CSAKDAKEFCLYTLKDEISMLEKEL 662
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A +M  FH ++MP  ++   L+  + +++         S        +Y+LKDE++ L K L
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSVGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATRMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNSLRKLL 229          
BLAST of CN188515 vs. ExPASy Swiss-Prot
Match: CHKB_RAT (Choline/ethanolamine kinase OS=Rattus norvegicus GN=Chkb PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 44/159 (27.67%), Postives = 84/159 (52.83%), Query Frame = 3
Query:  192 DALQVIPLKGAMTNEVYQIAWP---AKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRK-ALLWDRLRKWVSVAXSF--CSAKDAKEFCLYTLKDEISML 650
            + L V P+ G ++N +++ + P       G  R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E+++ +R L   ++RDP +S  +A KM  FH ++MP  ++   L+  + +++         S        +Y+LKDE++ L
Sbjct:   67 EELSVCPVSGGLSNLLFRCSLPNHVPSMGGEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYLPSRPLKTQELRDPVLSGAIATKMARFHGMEMPFTKEPRWLFGTMERYLKQIQDLPSTSLPQMNLVEMYSLKDEMNHL 225          
BLAST of CN188515 vs. ExPASy Swiss-Prot
Match: CHKB_HUMAN (Choline/ethanolamine kinase OS=Homo sapiens GN=CHKB PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 44/163 (26.99%), Postives = 87/163 (53.37%), Query Frame = 3
Query:  192 DALQVIPLKGAMTNEVYQIAWPAKNNGLA---RNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFIHARTLSAADIRDPKISELVAAKMREFHDLKMPGPRKA-LLWDRLRKWVSVAXSF--CSAKDAKEFCLYTLKDEISMLEKEL 662
            + L+V P+ G ++N +++ + P     +    R VL+R+YG  ++   +   E   F  ++ +  GP+L G F +GR+E++I +R L   ++R+P +S  +A KM +FH ++MP  ++   L+  + +++            +     +Y+LKDE+  L K L
Sbjct:   67 EELRVYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAILQGVDSLVLESVMFAILAERSLGPQLYGVFPEGRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLRKLL 229          
BLAST of CN188515 vs. ExPASy Swiss-Prot
Match: KICH_YEAST (Choline kinase OS=Saccharomyces cerevisiae GN=CKI1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 42/148 (28.38%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  141 KVLQSVASDWGDVIDDSDALQVIPLKGAMTNEVYQIAWPAKNNGLARNVLVRIYGEGVEVFFNRDDEIRTFECMSSQGQGPRLLGRFGDGRVEEFI-HARTLSAADIRDPKISELVAAKMREFHD----LKMPGPRKALLWDRLRKWV 569
            K +Q VA D          + ++ + GAMTN ++++ +P        ++L+RIYG  ++   +R+ E++    +S +  GP L G F +GR E+F+ +++TL+  DIR+ K S+ +A +M+E H     L       +  W ++ +W+
Sbjct:  139 KKIQPVAQD----------MNLVKISGAMTNAIFKVEYPK-----LPSLLLRIYGPNIDNIIDREYELQILARLSLKNIGPSLYGCFVNGRFEQFLENSKTLTKDDIRNWKNSQRIARRMKELHVGVPLLSSERKNGSACWQKINQWL 271          
The following BLAST results are available for this feature:
BLAST of CN188515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KICH_SCHPO6.829e-1534.35Putative choline kinase OS=Schizosaccharomyces pom... [more]
CHKB_MOUSE4.143e-1227.61Choline/ethanolamine kinase OS=Mus musculus GN=Chk... [more]
CHKB_RAT9.229e-1227.67Choline/ethanolamine kinase OS=Rattus norvegicus G... [more]
CHKB_HUMAN9.229e-1226.99Choline/ethanolamine kinase OS=Homo sapiens GN=CHK... [more]
KICH_YEAST1.205e-1128.38Choline kinase OS=Saccharomyces cerevisiae GN=CKI1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188515 ID=CN188515; Name=CN188515; organism=Citrus sinensis; type=EST; length=675bp
CGTTACAACTCAGTTTTTCTCTTCCTCTTAGGTAAAGTTTTCAATTTTTG
TTGCAATCACCACTTTGTGCTGAGCTGACTACAAGAATGGCTATAAAGAC
AACTGAATTGTTACCAAGTTCTTCTCCAGAAGAATTAAAGAAAGTTCTTC
AGTCAGTAGCTTCCGACTGGGGAGATGTTATCGATGATTCGGATGCATTG
CAGGTGATTCCATTAAAAGGTGCAATGACTAATGAGGTTTACCAAATAGC
GTGGCCTGCAAAAAATAATGGTCTTGCTAGAAACGTTTTGGTCCGGATTT
ATGGAGAAGGCGTCGAGGTTTTCTTCAACAGGGATGATGAAATTAGAACC
TTTGAGTGCATGTCCAGCCAAGGCCAGGGGCCTAGGCTTCTCGGGCGGTT
CGGTGATGGAAGAGTTGAGGAGTTCATTCATGCCAGGACACTGTCGGCTG
CTGACATCCGTGACCCCAAAATCTCTGAGTTGGTAGCAGCTAAGATGAGA
GAATTTCATGATCTCAAAATGCCTGGTCCAAGGAAAGCACTACTATGGGA
CAGACTGAGGAAATGGGTTAGTGTGGCCAANAGTTTCTGTTCTGCTAAAG
ATGCAAAGGAATTCTGCTTGTATACTCTGAAGGATGAAATCAGTATGCTG
GAGAAAGAGTTGCCAAATGACCATC
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