CN188330

Overview
NameCN188330
Unique NameCN188330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12058 contig Csv1_Contig12058:1..399. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188330 vs. ExPASy Swiss-Prot
Match: C2D61_ARATH (C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.351e-23
Identity = 63/126 (50.00%), Postives = 79/126 (62.70%), Query Frame = 3 
Query:   36 GLLH-AITVLEESAKPGVDSPCDGRTLNKEGMGNKEDQSNKKDIQESFANETTDKGSFSSVSSEKTPKVVDNFEPINIEGQQETGIWGPQPRSEVPHTWEPRKGKNRRSNTLDRRVPNGSFNSTNS 410
            G LH AITV+E++AK   D P     LNKE            DIQ SFA++TT+ GSFSS   +K+P VVDNFEPI I+GQ+ET IW  +P +EV   WEPRKGK+RR ++  +R PN    S  S
Sbjct:  389 GRLHLAITVIEDNAKSS-DDPLKKAKLNKE------------DIQTSFASDTTNLGSFSS---DKSPSVVDNFEPIKIDGQEETAIWVQKPGAEVSQIWEPRKGKSRRLDSQIQRTPNDESLSNGS 498

HSP 2 Score: 23.8682 bits (50), Expect = 2.351e-23
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 2 
Query:    2 LWIPLQNIKIGR 37
            +W+ LQNIK+GR
Sbjct:  379 MWLSLQNIKMGR 390
The following BLAST results are available for this feature:
BLAST of CN188330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C2D61_ARATH2.351e-2350.00C2 domain-containing protein At1g53590 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188330 ID=CN188330; Name=CN188330; organism=Citrus sinensis; type=EST; length=410bp
TTTATGGATACCTCTTCAGAACATTAAAATAGGCAGGCCTCCTTCACGCA
ATAACAGTTCTTGAAGAGAGTGCAAAGCCGGGGGTTGATAGCCCATGTGA
CGGGAGAACATTAAACAAGGAAGGTATGGGAAACAAGGAGGATCAAAGCA
ACAAGAAAGATATACAGGAATCCTTTGCGAATGAAACTACTGACAAGGGT
TCCTTTTCGTCTGTATCGTCAGAGAAGACACCAAAGGTGGTAGATAATTT
TGAACCCATCAACATTGAGGGGCAACAAGAGACTGGGATATGGGGCCCTC
AACCACGAAGTGAAGTACCTCATACATGGGAGCCTAGAAAGGGAAAAAAC
AGGCGCTCGAATACCCTGGACCGCAGAGTGCCTAATGGTTCCTTCAACAG
TACCAATTCT
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