CN188110

Overview
NameCN188110
Unique NameCN188110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10531 contig Csv1_Contig10531:430..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188110 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.780e-27
Identity = 56/97 (57.73%), Postives = 72/97 (74.23%), Query Frame = -2
Query:  259 QKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 549
            +KAQ+ V EA+TGGP+AA +YAA E K  +VTNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY++ GYLPLVP+DDI KA+++
Sbjct:  112 EKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208          
BLAST of CN188110 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.203e-11
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = -2
Query:  259 SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 450
            +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  +KGY V  Y+PLVP + I+K F +
Sbjct:  169 AVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232          
BLAST of CN188110 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.203e-11
Identity = 32/63 (50.79%), Postives = 41/63 (65.08%), Query Frame = -2
Query:  262 SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFK 450
            +V AW  LN   LF  +A + VPTAA WS+KYN  V    ++GYTV  YLPL+P + IAK F+
Sbjct:  167 AVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQ 229          
BLAST of CN188110 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.875e-11
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = -2
Query:  265 KAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 546
            +A+++VSE +  G         ++ +      +V AW KLN   LF  +A+  +P AA  ++KYN ++V   +KGY V  YLPLVP + IAK F
Sbjct:   71 QARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164          
The following BLAST results are available for this feature:
BLAST of CN188110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
Y1736_ARATH1.780e-2757.73REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
Y3550_ARATH5.203e-1151.56REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI5.203e-1150.79Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
SRP_PHAVU8.875e-1137.23Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188110 ID=CN188110; Name=CN188110; organism=Citrus sinensis; type=EST; length=550bp
GAGGGAACCATTTATCTCCATTCACATATGGGGAAAACCAAGTCTTAAAG
GTCATTTACAGATTACAAACCATACTGCCACTACCCGGCCACACCTTCAA
GCCTAGAATTTTGCAAACCAGACCACTAGATGAAGCAAACTCATCAGACA
AAAAGTAAATTCTTAGTCAGAATCTGAGCTTGAATCCTTTTCCTTTGCAT
CTTCTTTCTTTGGAGCATCTTCTTTCTCTGGAGCATCTTCTTTCTTGGGA
GCTTCACTCTGCTTAAAAGCTTTGGCTATGTCATCAATGGGAACCAAAGG
AAGATAGCCAAAGACTGTGTAACCCTTCTTCGTCATCTCCACGACAAGAT
GGTTATACTTCTTGGACCACTGTGCAGCTGTGGGAACAGCCATATCTGCC
ATTGTGTGGAACAATGCATAGTGGTTTAGTTTATACCATGCTTTCACGGA
ATTTGTTACCAGAAGGTGTTTAGACTCAGCAGCAGCATAATGGACAGCTG
CTCGAGGCCCCCCGGTTTGGGCCTCACTCACAAGATTTTGAGCTTTCTGT
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