CN188058

Overview
NameCN188058
Unique NameCN188058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6034 contig Csv1_Contig6034:369..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 6.348e-75
Identity = 133/166 (80.12%), Postives = 152/166 (91.57%), Query Frame = -1
Query:  179 VACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFLIA 676
            VACFQ ADRDNSG IDDKELQGALSSYNQSFS+RTV LLMY FTN+N RKIGPKEF  +F SLQNWR++FE+ D+DRSG+ID+NELR+ALMSLGF+VSPV+LDLLV+KFDK+GG+++AIEYDNFIECCLTVKGLTEKFKE+DT  SGSA F YENFML VLPFL+A
Sbjct:  170 VACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTNSNVRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDALMSLGFSVSPVILDLLVSKFDKSGGRNRAIEYDNFIECCLTVKGLTEKFKEKDTALSGSAIFNYENFMLTVLPFLVA 335          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.667e-73
Identity = 132/166 (79.52%), Postives = 151/166 (90.96%), Query Frame = -1
Query:  179 VACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFLIA 676
            VACFQ AD+D SG IDDKELQGALSSY Q FS+RTV LLMY FTN+NA KIGPKEF  +F+SLQNWR++FE+ D+DRSG+ID NELR+AL+SLGF+VSPVVLDLLV+KFDK+GGK++AIEYDNFIECCLTVKGLTEKFKE+DT YSGSATF YE+FML VLPFLIA
Sbjct:  189 VACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTNSNAMKIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDALLSLGFSVSPVVLDLLVSKFDKSGGKNRAIEYDNFIECCLTVKGLTEKFKEKDTAYSGSATFNYESFMLTVLPFLIA 354          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.163e-34
Identity = 74/167 (44.31%), Postives = 114/167 (68.26%), Query Frame = -1
Query:  185 VACFQLADRDNSGLIDDKELQGALS-SYNQSFSLRTVRLLM--YTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFL 676
            V  F+ ADR+ SG +++ EL+ ALS S     S RT+RLL+  Y     +  ++GPKE++++++ L  WRA+F + DRDRSGK++S +LR+A  +LG  +   V  L+V++FD   GK+  + +D+F+EC + VKGLTEKF+E D  Y+G AT +Y+ FML V+PF+
Sbjct:   58 VRSFESADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVDSLLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDAFYNLGCVLPTSVHQLIVSQFDDGTGKTVDLCFDSFLECGMIVKGLTEKFRENDPGYTGYATLSYDVFMLMVIPFI 224          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: PEF1_DANRE (Peflin OS=Danio rerio GN=pef1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 56/163 (34.36%), Postives = 99/163 (60.74%), Query Frame = -1
Query:  182 FQLADRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFLI 667
            F   D D SG I+ KEL+ AL ++N S F+  T  +++  F  T + ++    F  ++  LQ WRA F++ DRDRSG I++NE+ +AL  +G+ +SP  +  LV ++   GG +  ++ D FI+ C  ++ +T+ F+E+DT  +G+   +YE+F+ + +  L+
Sbjct:  109 FSTVDSDQSGYINAKELKQALMNFNNSSFNDETCIMMLNMFDKTKSGRVDVFGFSALWTFLQQWRAAFQQFDRDRSGSINTNEMHQALSQMGYNLSPQFIQELVNRYSVRGG-TGVLQLDRFIQVCTQLQSMTQAFREKDTGMTGNVRMSYEDFLSSAITRLM 270          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 54/155 (34.84%), Postives = 95/155 (61.29%), Query Frame = -1
Query:  206 FQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 667
            FQ  D D+SG I  KEL+ AL + N  SF+  T  ++M  F  +N+ +I    F  ++  +Q WR +F++ DRDRSG I+  EL +AL  +G+ +SP  + ++++++ +   +   ++ D FI+ C  ++ +TE F+E+DT   G+A  +YE+F+
Sbjct:  122 FQTVDTDHSGYISLKELKQALVNTNWSSFNDETCTMMMNMFDKSNSGRIDMFGFSALWRFIQQWRNLFQQYDRDRSGSINQGELHQALCQMGYQLSPQFVQIVMSRYAQRSAQ-PGLQLDRFIQICTQLQSMTEAFREKDTGQIGTAKLSYEDFI 275          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: PDCD6_MOUSE (Programmed cell death protein 6 OS=Mus musculus GN=Pdcd6 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 60/165 (36.36%), Postives = 93/165 (56.36%), Query Frame = -1
Query:  197 ESYFVACFQLADRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAV 688
            +S+    FQ  D+D SG+I D ELQ ALS+   + F+  TVR ++  F   N   +   EF  V+  + +W+ +F   DRD SG ID NEL++AL   G+ +S    D+L+ KFD+ G     I +D+FI+ C+ ++ LT+ F+  DT   G    +YE ++  V
Sbjct:   25 QSFLWNVFQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQG--RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMV 187          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: PDCD6_HUMAN (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 60/165 (36.36%), Postives = 93/165 (56.36%), Query Frame = -1
Query:  197 ESYFVACFQLADRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAV 688
            +S+    FQ  D+D SG+I D ELQ ALS+   + F+  TVR ++  F   N   +   EF  V+  + +W+ +F   DRD SG ID NEL++AL   G+ +S    D+L+ KFD+ G     I +D+FI+ C+ ++ LT+ F+  DT   G    +YE ++  V
Sbjct:   25 QSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQG--RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMV 187          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: PEF1_MOUSE (Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.389e-21
Identity = 58/155 (37.42%), Postives = 92/155 (59.35%), Query Frame = -1
Query:  206 FQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 667
            FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T + +I    F  ++  LQ WR +F++ DRDRSG I S EL++AL  +G+ +SP    LLV+++        A++ D FI+ C  ++ LTE F+E+DT   G+   ++E+F+
Sbjct:  114 FQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMGYNLSPQFTQLLVSRYCARSA-IPAMQLDCFIKVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV 267          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: SORCN_SCHJA (Sorcin OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.814e-21
Identity = 56/163 (34.36%), Postives = 90/163 (55.21%), Query Frame = -1
Query:  182 FQLADRDNSGLIDDKELQGALSS-YNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFLI 667
            F   D D SG I   ELQ +LS+      ++RTV+L++  F       I   EF+ +F  +Q+W+  F + DRD SG ID NE   AL+S G+ +SP  ++L++ +FD+  G   +I +D+FI  C+ ++ LT +F   D    G   F++E F+ +    +I
Sbjct:   12 FSRVDADKSGSISANELQTSLSNGLGTPLNIRTVQLMVAMFDRDMNGTINFNEFLGLFKYVQDWQTCFRRYDRDNSGSIDLNEFSNALISFGYHLSPQFVNLMMRRFDRNRG---SIAFDDFIYACVCLQTLTREFSRYDCRGIGHTVFSFEQFLTSAFAVII 171          
BLAST of CN188058 vs. ExPASy Swiss-Prot
Match: PEF1_HUMAN (Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 55/155 (35.48%), Postives = 92/155 (59.35%), Query Frame = -1
Query:  206 FQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 667
            FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T + +I    F  ++  +Q W+ +F++ DRDRSG I   EL++AL  +G+ +SP    LLV+++      + A++ D FI+ C  ++ LTE F+E+DT   G+   ++E+F+
Sbjct:  123 FQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSA-NPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV 276          
The following BLAST results are available for this feature:
BLAST of CN188058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
CML49_ARATH6.348e-7580.12Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH2.667e-7379.52Probable calcium-binding protein CML50 OS=Arabidop... [more]
CML48_ARATH4.163e-3444.31Probable calcium-binding protein CML48 OS=Arabidop... [more]
PEF1_DANRE5.101e-2434.36Peflin OS=Danio rerio GN=pef1 PE=2 SV=1[more]
PEF1_XENLA1.256e-2234.84Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1[more]
PDCD6_MOUSE1.256e-2236.36Programmed cell death protein 6 OS=Mus musculus GN... [more]
PDCD6_HUMAN1.641e-2236.36Programmed cell death protein 6 OS=Homo sapiens GN... [more]
PEF1_MOUSE1.389e-2137.42Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1[more]
SORCN_SCHJA1.814e-2134.36Sorcin OS=Schistosoma japonicum PE=2 SV=1[more]
PEF1_HUMAN4.041e-2135.48Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005G24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188058 ID=CN188058; Name=CN188058; organism=Citrus sinensis; type=EST; length=700bp
TTTTTTTTTTTTTTTTTAGTAATAAACAAACCATAACACTGTTTTTTATT
TAACTAAGAGGTAAACTACAGCCACGCCCCTTATCCACATAAAAACATCG
AAAACACCTAAAACGTTACATCACATTCACACCAAATCCACGATTCAAAG
TCATTAAACAACAAATTTTAAAAACCTAAGCAATGAGGAATGGCAGAACA
GCCAGCATGAAATTCTCGTAAGTGAAAGTTGCAGATCCAGAGTACGTAGT
ATCCCTCTCCTTAAATTTCTCCGTTAACCCCTTAACCGTGAGACAGCACT
CGATGAAGTTATCATATTCAATGGCCTTGCTTTTGCCACCAGTTTTGTCA
AACTTAGTGACAAGCAAGTCCAATACCACGGGTGAAACCGCAAAACCTAG
ACTCATAAGAGCCTCCCGCAACTCATTCGAATCAATCTTTCCACTCCTGT
CCCTGTCCACTTTCTCAAACATGGCCCTCCAGTTTTGAAGACTGTGAAAC
ACTTGGATGAACTCCTTAGGCCCGATTTTTCTCGCGTTAGTGTTGGTGAA
TGTGTACATAAGCAGACGAACGGTTCTCAAGCTGAAGCTCTGATTGTAAG
AAGACAAGGCTCCTTGCAACTCCTTATCGTCGATGAGGCCGCTGTTGTCC
CGGTCGGCCAACTGGAAGCACGCCACGAAATAACTTTCCTTCTATTGATC
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