CN188049

Overview
NameCN188049
Unique NameCN188049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188049 vs. ExPASy Swiss-Prot
Match: TMM19_RAT (Transmembrane protein 19 OS=Rattus norvegicus GN=Tmem19 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.942e-30
Identity = 83/220 (37.73%), Postives = 116/220 (52.73%), Query Frame = 2
Query:  119 YRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNXXXXXXXXXXXXXXXXXXXXTFVLFGFFTATCT----RDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSG 763
            +++KSL+ SGA+ G +V      A   F   LL+FF TSSKLTK   E K+R+D+++KEGGQRNW+QV  N G+   L ++     G  +  +D  +    + +   +L       GDTW+SE+  VLS   PRLITT++ V  GTN                    TFV   +F          DI+  Q  +I    +AGL GS++DS LGAT+QFSG
Sbjct:   84 FKKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLTSSKLTKWRGEMKKRLDSEYKEGGQRNWVQVFCNGGVPTELALLYMIENGPGEMPIDFAKQHTASWMCLSLLAALASSAGDTWASEVAPVLSKSSPRLITTWEKVPVGTN-----GGVTAVGLVSSLLGGTFVGLAYFLTQLVFVNDLDISAPQWPLIAFGGLAGLLGSIVDSFLGATMQFSG 298          
BLAST of CN188049 vs. ExPASy Swiss-Prot
Match: TMM19_PONAB (Transmembrane protein 19 OS=Pongo abelii GN=TMEM19 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.203e-29
Identity = 82/219 (37.44%), Postives = 116/219 (52.97%), Query Frame = 2
Query:  122 RRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNXXXXXXXXXXXXXXXXXXXXTFVLFGFFTATC----TRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSG 763
            ++KSL+ SGA+ G +V      A   F   LL+FF +SSKLTK   E K+R+D+++KEGGQRNWIQV  N  +   L ++     G  +  +D  +    + +   +L    C  GDTW+SE+G VLS   PRLITT++ V  GTN                    TFV   +F          DI+  Q  +I    +AGL GS++DS LGAT+Q++G
Sbjct:   70 KKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWKGEMKKRLDSEYKEGGQRNWIQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSPPRLITTWEKVPVGTN-----GGVTVVGLVSSLLGGTFVGIAYFLTQLIFVNDLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTG 283          
BLAST of CN188049 vs. ExPASy Swiss-Prot
Match: TMM19_HUMAN (Transmembrane protein 19 OS=Homo sapiens GN=TMEM19 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.464e-29
Identity = 81/219 (36.99%), Postives = 116/219 (52.97%), Query Frame = 2
Query:  122 RRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNXXXXXXXXXXXXXXXXXXXXTFVLFGFFTATC----TRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSG 763
            ++KSL+ SGA+ G +V      A   F   LL+FF +SSKLTK   E K+R+D+++KEGGQRNW+QV  N  +   L ++     G  +  +D  +    + +   +L    C  GDTW+SE+G VLS   PRLITT++ V  GTN                    TFV   +F          DI+  Q  +I    +AGL GS++DS LGAT+Q++G
Sbjct:   70 KKKSLDHSGALGGLVVGFILTIANFSFFTSLLMFFLSSSKLTKWKGEVKKRLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEIPVDFSKQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSSPRLITTWEKVPVGTN-----GGVTVVGLVSSLLGGTFVGIAYFLTQLIFVNDLDISAPQWPIIAFGGLAGLLGSIVDSYLGATMQYTG 283          
BLAST of CN188049 vs. ExPASy Swiss-Prot
Match: TMM19_XENLA (Transmembrane protein 19 OS=Xenopus laevis GN=tmem19 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.590e-28
Identity = 81/223 (36.32%), Postives = 116/223 (52.02%), Query Frame = 2
Query:  122 RRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNXXXXXXXXXXXXXXXXXXXXTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNKV 787
            +++SL+ SGA+ G +V      A   F + LL FFF SSKLTK   E K+  D+++KEGGQRNW+QV  N G+ A L ++     G  +  +D  +    + +   +LG   C  GDTW+SE+G VLS   PRLITT++ V  GTN                     + +          +IA  Q  ++    +AGL GSLIDS LGA +Q+SG+     K+
Sbjct:   70 KKRSLDSSGALGGLLVGFILTIANYSFFSALLAFFFISSKLTKWRGEVKKCYDSEYKEGGQRNWVQVFCNGGLPAELALLYMIENGPGEIPIDFSKEYTASWMCLSLLGALSCSAGDTWASEIGPVLSKSAPRLITTWEKVPVGTNGGVTPIGLISSLLGGISVGVAYFVTQLVFVD-DLEIAAPQWPIVIYGGMAGLLGSLIDSYLGAIMQYSGYDESTGKI 291          
BLAST of CN188049 vs. ExPASy Swiss-Prot
Match: TMM19_MOUSE (Transmembrane protein 19 OS=Mus musculus GN=Tmem19 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.890e-28
Identity = 79/220 (35.91%), Postives = 113/220 (51.36%), Query Frame = 2
Query:  119 YRRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNXXXXXXXXXXXXXXXXXXXXTFVLFGFFTATCT----RDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSG 763
            +++KSL+ SGA+ G +V      A   F   L+ FF +SSKLTK     K+++D+++KEGGQRNW+QV  N  +   L ++     G  +  +D  +    + +   +L       GDTW+SE+  VLS   PRLITT++ V  GTN                    TFV   +F          DI+  Q  +I    +AGL GSL+DS LGAT+QFSG
Sbjct:   69 FKKKSLDHSGALGGLVVGFILTIANFSFFTSLMTFFLSSSKLTKWRGNIKKQLDSEYKEGGQRNWVQVFCNGAVPTELALLYMIENGPGEMPIDFSKQHTASWMCLSLLAALASSAGDTWASEVAPVLSKSSPRLITTWEKVPVGTN-----GGVTAVGLASSLLGGTFVGLAYFLTQLVFVNDLDISAPQWPIIAFGGVAGLFGSLVDSFLGATMQFSG 283          
BLAST of CN188049 vs. ExPASy Swiss-Prot
Match: TMM19_XENTR (Transmembrane protein 19 OS=Xenopus tropicalis GN=tmem19 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.346e-27
Identity = 80/223 (35.87%), Postives = 115/223 (51.57%), Query Frame = 2
Query:  122 RRKSLNFSGAVSGFIVMTAHIAAGSRFGALLLVFFFTSSKLTKVGEERKRRVDADFKEGGQRNWIQVLSNSGIAAVLVVIVWKLTGQQDKCLDSKELPLVTSLIGGILGHYCCCNGDTWSSELG-VLSDEQPRLITTFKPVRRGTNXXXXXXXXXXXXXXXXXXXXTFVLFGFFTATCTRDIALKQLLVIPISAIAGLCGSLIDSLLGATLQFSGFCSVRNKV 787
            +++SL+ SGA+ G +V      A   F + LL FFF SSKLTK   E K+  D+++KEGGQRNW+QV  N G+ A L ++     G  +  +D  +    + +   +LG      GDTW+SE+G VLS   PRLITT++ V  GTN                     + +          +IA  Q  ++    +AGL GSLIDS LGA +Q+SG+     K+
Sbjct:   70 KKRSLDNSGALGGLLVGFILTIANYSFFSALLTFFFISSKLTKWKGEVKKCYDSEYKEGGQRNWVQVFCNGGLPAELALLYMIENGPGEIPIDFSKEYTASWMCLSLLGALASSAGDTWASEIGPVLSKSSPRLITTWEKVPVGTNGGVTPVGLISSLLGGTSVGVAYFVTQLIFVP-DLEIAAPQWPIVIYGGMAGLLGSLIDSYLGAIMQYSGYDESTGKI 291          
The following BLAST results are available for this feature:
BLAST of CN188049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TMM19_RAT4.942e-3037.73Transmembrane protein 19 OS=Rattus norvegicus GN=T... [more]
TMM19_PONAB3.203e-2937.44Transmembrane protein 19 OS=Pongo abelii GN=TMEM19... [more]
TMM19_HUMAN5.464e-2936.99Transmembrane protein 19 OS=Homo sapiens GN=TMEM19... [more]
TMM19_XENLA1.590e-2836.32Transmembrane protein 19 OS=Xenopus laevis GN=tmem... [more]
TMM19_MOUSE7.890e-2835.91Transmembrane protein 19 OS=Mus musculus GN=Tmem19... [more]
TMM19_XENTR1.346e-2735.87Transmembrane protein 19 OS=Xenopus tropicalis GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005G19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188049 ID=CN188049; Name=CN188049; organism=Citrus sinensis; type=EST; length=838bp
TTCTGTACCTCCCAGTCAGTGCTTCGAATCCTTTCCGCAGACGGGGATAA
CAATGGAAACTTTTCTAAACCAAACGTTAATCGCCGTCTTAATCTCTTCT
CTGATCGCGATTAGATCCTACAGGAGAAAATCCCTCAACTTCTCCGGCGC
AGTCTCCGGCTTTATTGTTATGACTGCCCACATCGCCGCTGGAAGCAGAT
TCGGAGCTTTATTACTTGTCTTCTTCTTCACTTCATCCAAGCTTACTAAG
GTTGGAGAGGAGAGGAAGCGACGCGTTGACGCTGACTTTAAGGAGGGTGG
TCAAAGAAATTGGATACAAGTGCTATCCAATAGTGGTATTGCAGCAGTTC
TAGTTGTGATTGTTTGGAAGTTGACTGGACAGCAGGACAAGTGTTTGGAC
TCGAAAGAGTTGCCTCTTGTGACGTCTCTCATTGGCGGTATTTTAGGCCA
CTACTGCTGCTGCAATGGGGACACTTGGTCTTCCGAGCTTGGGGTACTTA
GTGATGAGCAGCCTCGATTAATCACAACTTTTAAGCCTGTTCGGAGGGGC
ACAAATGGTGGTGTAACAAAAGCAGGACTCCTGGCAGCTGTGGCGGCTGG
CAGTGTCATTGGACTGACATTTGTTCTCTTTGGATTTTTCACTGCAACAT
GCACTCGTGATATAGCTCTTAAGCAGTTATTGGTGATACCTATCTCTGCA
ATAGCAGGATTATGCGGAAGTCTCATAGATTCTCTGTTAGGAGCAACACT
GCAATTCAGTGGATTCTGCAGTGTCCGCAACAAGGTAAATGTCTTGTAAA
ATCTAGATTAGCATGAGCTTTCTGTGAATGGGATACAT
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