CN187850

Overview
NameCN187850
Unique NameCN187850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4378 contig Csv1_Contig4378:347..868. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN187850 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.442e-14
Identity = 34/46 (73.91%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 SVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 138
            +VGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG
Sbjct:   74 AVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119
[Close]
BLAST of CN187850 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.599e-11
Identity = 28/45 (62.22%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    4 VGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 138
            VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G
Sbjct:   67 VGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111
The following BLAST results are available for this feature:
BLAST of CN187850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HMGL_SOYBN3.442e-1473.91HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI1.599e-1162.22HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005B16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187850 ID=CN187850; Name=CN187850; organism=Citrus sinensis; type=EST; length=522bp
AGTGTTGGTAAAGCTGGTGGTGAGAAATGGAAGTCAATGTCTGAAGCTGA
TAAAGCACCGTATGTTGCTAAGGCAGAGAAGCGCAAGGTTGAGTATGAGA
AGGATATGAAAAACTACAATAGGAGACAGGCGGAGGGAACTAAGCCGGAG
GAAGAAGAGGAGTCTGAGAAGTCTATGTCAGAGGTGAATGATGAGGATGA
TGATGAAGAAGGCAGTGGCGAGGAGGATGATGATGAATAGAAGTTGAAGG
AAGAAATTAGCATAGTCATGTTAGGCTGTGACAATGTTTCAAACAACATA
TGTTAATGCTTTGTGCTTCCATGTTAATTTTTTTGGATGCTTTCATCATC
TTCATCATCATGTAAGAGAATCATGTTGCTTCTCCCTCGACATTTTCTTA
TGCCTGCCTTTCAAAGAATTAATAGCTGTAGGTGGGAGATTCACTGCTCT
ATATGTACTGTGTTCTAAAGCTTAATGATTTAGCTAAGGCGTTCCATCGT
TTGTNGAAAAAAAAAAAAAAAA
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