CK938701
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1) HSP 1 Score: 270.011 bits (689), Expect = 8.900e-72 Identity = 134/140 (95.71%), Postives = 136/140 (97.14%), Query Frame = 3 Query: 99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518 +ESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRRCEPKKFGGRGARARFQKSYR Sbjct: 6 IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 2.424e-69 Identity = 129/148 (87.16%), Postives = 139/148 (93.92%), Query Frame = 3 Query: 75 MATAKAGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518 MAT A ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR Sbjct: 1 MATQPA--TESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1) HSP 1 Score: 261.536 bits (667), Expect = 3.165e-69 Identity = 128/148 (86.49%), Postives = 139/148 (93.92%), Query Frame = 3 Query: 75 MATAKAGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518 MAT A ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR+R+QKSYR Sbjct: 1 MATQPA--TESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 1.203e-68 Identity = 125/139 (89.93%), Postives = 136/139 (97.84%), Query Frame = 3 Query: 102 ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518 ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRHRF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR Sbjct: 7 ESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 5.588e-66 Identity = 123/140 (87.86%), Postives = 136/140 (97.14%), Query Frame = 3 Query: 99 VESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518 VESVQCFGRKKTAVAVTYC+RGRGLI++ PIELVEPEILR+KA+EP+LLLGR +FAGVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR Sbjct: 4 VESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 4.730e-65 Identity = 123/148 (83.11%), Postives = 134/148 (90.54%), Query Frame = 3 Query: 75 MATAKAGPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518 MAT A ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRFAGVDMRIR GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCE KKFGG GARARFQKSYR Sbjct: 1 MATQPAK--ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63 Identity = 116/141 (82.27%), Postives = 127/141 (90.07%), Query Frame = 3 Query: 96 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518 P +VQCFGRKKTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR Sbjct: 9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63 Identity = 116/141 (82.27%), Postives = 127/141 (90.07%), Query Frame = 3 Query: 96 PVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518 P +VQCFGRKKTAVAV+YCK GRGLIK+NG PIEL+ PE+LR KA+EPILL GR RF +DMRIRV+GGG TSQIYAIRQ+IAKALVA+YQKYVDE SKKE+KDI RYDRTLLVADPRRCEPKKFGGRGARARFQKSYR Sbjct: 9 PPGTVQCFGRKKTAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2) HSP 1 Score: 232.646 bits (592), Expect = 1.575e-60 Identity = 109/142 (76.76%), Postives = 128/142 (90.14%), Query Frame = 3 Query: 93 GPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518 GP++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR Sbjct: 5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
BLAST of CK938701 vs. ExPASy Swiss-Prot
Match: RS16_PIG (40S ribosomal protein S16 OS=Sus scrofa GN=RPS16 PE=2 SV=4) HSP 1 Score: 232.646 bits (592), Expect = 1.575e-60 Identity = 109/142 (76.76%), Postives = 128/142 (90.14%), Query Frame = 3 Query: 93 GPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 518 GP++SVQ FGRKKTA AV +CKRG GLIK+NG P+E++EP L++K EP+LLLG+ RFAGVD+R+RVKGGGH +QIYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLLVADPRRCE KKFGG GARAR+QKSYR Sbjct: 5 GPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146 The following BLAST results are available for this feature:
BLAST of CK938701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK938701 ID=CK938701; Name=CK938701; organism=Citrus sinensis; type=EST; length=719bpback to top |