CN187807

Overview
NameCN187807
Unique NameCN187807
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5516 contig Csv1_Contig5516:139..915. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_CARTI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.358e-100
Identity = 174/249 (69.88%), Postives = 205/249 (82.33%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGAS +PWA+W R+WTAEENRHGDLL ++LYLSGRVDM  I+KT+QYLI +GMDP TEN+PYLGF+YTSFQERATF+SHGNTAR +K+ GD  LA+ICGTIASDEKRHE AY +IVEKL E+DP G ++A AD+M KKI+MPAHLMYDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW            R+AQ++VCGL PRIRRL+E A  RAK  + P+V FSWIF+R++ L
Sbjct:  150 TLDGVRDETGASLTPWAVWTRAWTAEENRHGDLLHTYLYLSGRVDMRQIQKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFVSHGNTARHAKDHGDVKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFLVGRWKVADLTGLSGEGRKAQDYVCGLPPRIRRLEERAQGRAK--EGPVVPFSWIFDRQVKL 396          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_SOLCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2)

HSP 1 Score: 362.073 bits (928), Expect = 1.960e-99
Identity = 172/249 (69.08%), Postives = 201/249 (80.72%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTAR +KE GD  LA++CG IA+DEKRHE AY +IVEKL EVDP G ++A+AD+M KKI+MPAHLMYDG D  LF HF+ VAQRLGVYTA DYADILEFL+GRW             +A+++VCGLAPRIR+L+E A  RAK+  P  V FSW+F +++ L
Sbjct:  147 TLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARHAKEHGDMKLAQVCGIIAADEKRHETAYTKIVEKLFEVDPDGTVLAVADMMRKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWEIEKLTGLSGEGHKARDYVCGLAPRIRKLEERAQARAKQKAP--VPFSWVFGKDIKL 393          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_OLEEU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 5.704e-99
Identity = 173/249 (69.48%), Postives = 200/249 (80.32%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTARL+KE GD  LA+ICG IA+DEKRHE AY +IVEKL E+DP G ++A+AD+M KK++MPAHLMYDG D  LF +F++VAQRLGVYTA DYADILEFL+GRW            R+AQ++VC L PRIRRL+E A  R KK       FSWIF RE++L
Sbjct:  144 TLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDLKLAQICGIIAADEKRHETAYTKIVEKLFEIDPDGTVLALADMMRKKVSMPAHLMYDGQDDNLFENFSSVAQRLGVYTAKDYADILEFLVGRWDIEKLTGLSGEGRKAQDYVCTLPPRIRRLEERAQSRVKKAS--ATPFSWIFGREINL 390          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_SOLTU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.660e-98
Identity = 174/249 (69.88%), Postives = 200/249 (80.32%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGA+ +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TENNPYLGFVYTS ++  TF+SHGNTARL+KE GD  LA+ICG+IA+DEKRHE AY +IVEKLLEVDP GA++AI D+M K I+MPAHLMYDG D  LF HF+AVAQRLGVYTA DYADILEF +GRW            RRAQ++VCGLAPRIR+L+E A  RAK  K   V FSWIF +E+ L
Sbjct:  147 TLDGVRDETGATVTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENNPYLGFVYTSLRKGVTFVSHGNTARLAKEHGDMKLAQICGSIAADEKRHETAYTKIVEKLLEVDPDGAVLAIGDMMRKNISMPAHLMYDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFHVGRWEVEKLTGLSSEGRRAQDYVCGLAPRIRKLEERAQARAKHAKS--VPFSWIFGKEIKL 393          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_BRANA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 2.168e-98
Identity = 175/249 (70.28%), Postives = 199/249 (79.92%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTAR +KE GD  LA+ICGTIA+DEKRHE AY +IVEKL E+DP G ++A AD+M KKI+MPAHLMYDG D  LF +F++VAQRLGVYTA DYADILEFL+GRW             +AQE++CGL PRIRRL E A  RAK  K P V FSWI +RE+ L
Sbjct:  152 TLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARQAKEHGDLKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVMAFADMMRKKISMPAHLMYDGRDESLFDNFSSVAQRLGVYTAKDYADILEFLVGRWKIESLTGLSGEGNKAQEYLCGLTPRIRRLDERAQARAK--KGPKVPFSWIHDREVQL 398          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STADS_BRANA (Acyl-[acyl-carrier-protein] desaturase, seed specific, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 2.168e-98
Identity = 173/249 (69.48%), Postives = 199/249 (79.92%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGAS + WA+W R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATF+SHGNTAR +KE GD  LA+ICGTIA+DEKRHE AY +IVEKLLE+DP G ++A AD+M KKI+MPAHLMYDG D  LF +F++VAQRLGVYTA DYADILEFL GRW             +AQE++CGL PRIRRL E A  RAK  K P + FSWI +RE+ L
Sbjct:  153 TLDGVRDETGASPTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFVSHGNTARQAKEHGDLKLAQICGTIAADEKRHETAYTKIVEKLLEIDPDGTVVAFADMMRKKISMPAHLMYDGRDDNLFDNFSSVAQRLGVYTAKDYADILEFLAGRWRIESLTGLSGEGNKAQEYLCGLTPRIRRLDERAQARAK--KGPKIPFSWIHDREVQL 399          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_RICCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.831e-98
Identity = 173/249 (69.48%), Postives = 201/249 (80.72%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHGNTAR +KE GD  LA+ICGTIA+DEKRHE AY +IVEKL E+DP G ++A AD+M KKI+MPAHLMYDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW            ++AQ++VC L PRIRRL+E A  RAK  + P + FSWIF+R++ L
Sbjct:  150 TLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAK--EAPTMPFSWIFDRQVKL 396          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_CUCSA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 4.829e-98
Identity = 170/249 (68.27%), Postives = 200/249 (80.32%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  +EKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTARL+KE GD  LA+ICGTI +DEKRHE AY +IVEKL E+DP G +IA  ++M KK++MPAHLMYDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW            ++AQ++VC L  RIR+L+E A  RAK  + P + FSWIF+R++ L
Sbjct:  150 TLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQVEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDIKLAQICGTITADEKRHETAYTKIVEKLFEIDPEGTVIAFEEMMRKKVSMPAHLMYDGRDDNLFHHFSAVAQRLGVYTAKDYADILEFLVGRWKVESLTGLSGEGQKAQDYVCALPARIRKLEERAQGRAK--EGPTIPFSWIFDRQVKL 396          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_SPIOL (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 4.088e-97
Identity = 169/249 (67.87%), Postives = 200/249 (80.32%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDG +DETGAS + WA+W R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TENNPYLGFVYTSFQERATF+SHGN+ARL+KE GD  +A+ICG IASDEKRHE AY +IVEKL E+DP   ++A AD+M KKI+MPAHLMYDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW            ++AQ++VC L PRIRRL+E A +RAK  + P + FSWIF+R++ L
Sbjct:  153 TLDGAKDETGASPTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMRSIEKTIQYLIGSGMDPRTENNPYLGFVYTSFQERATFVSHGNSARLAKEHGDLKMAQICGIIASDEKRHETAYTKIVEKLFEIDPDATVLAFADMMKKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWEVEKLTGLSSEGQKAQDYVCSLPPRIRRLEERARERAK--QAPSMPFSWIFDRQVKL 399          
BLAST of CN187807 vs. ExPASy Swiss-Prot
Match: STAD_ELAGV (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Elaeis guineensis var. tenera PE=2 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 4.088e-97
Identity = 172/249 (69.08%), Postives = 199/249 (79.92%), Query Frame = 2
Query:    5 TLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXXRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 751
            TLDGVRDETGAS + WA+W R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHGNTAR +KE GD  LA+ICGTIASDEKRHE AY +IVEKL E+DP G +++ AD+M KKI+MPAHLMYDG D  LF HF+AVAQRLGV TA DYADILEFLI RW            +RAQ+FVC LAPRIRR++E A +RAK  + P +  SWI+ RE+ L
Sbjct:  147 TLDGVRDETGASLTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARHAKEHGDVKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTVLSFADMMKKKISMPAHLMYDGQDDNLFEHFSAVAQRLGVDTAKDYADILEFLINRWKVGELTGFSGEGKRAQDFVCTLAPRIRRIEERAQERAK--QAPRIPCSWIYGREVQL 393          
The following BLAST results are available for this feature:
BLAST of CN187807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_CARTI1.358e-10069.88Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLCO1.960e-9969.08Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_OLEEU5.704e-9969.48Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLTU1.660e-9869.88Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_BRANA2.168e-9870.28Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STADS_BRANA2.168e-9869.48Acyl-[acyl-carrier-protein] desaturase, seed speci... [more]
STAD_RICCO2.831e-9869.48Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CUCSA4.829e-9868.27Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SPIOL4.088e-9767.87Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ELAGV4.088e-9769.08Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005A14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187807 ID=CN187807; Name=CN187807; organism=Citrus sinensis; type=EST; length=777bp
GAGGACGCTCGATGGTGTCAGAGATGAGACCGGTGCAAGTTCCAGCCCAT
GGGCTATTTGGAACCGCTCCTGGACTGCTGAGGAAAACCGCCATGGAGAT
TTGCTCAGGAGCTTCTTGTATTTGTCGGGTCGGGTCGATATGCTCATGAT
TGAGAAGACTGTCCAGTATCTTATCAGTGCTGGCATGGACCCTGGGACAG
AGAACAACCCGTATTTGGGCTTTGTTTACACATCGTTTCAAGAGCGCGCC
ACTTTCATATCACACGGCAACACGGCCCGCCTGTCGAAAGAGGGAGGTGA
TCCAGTGCTCGCGCGCATATGTGGAACCATTGCATCAGACGAGAAGCGCC
ACGAAAACGCCTACGCTAGGATCGTCGAAAAGCTCCTTGAAGTGGATCCC
ACGGGTGCCATGATCGCAATTGCTGATCTGATGAACAAGAAAATCACAAT
GCCAGCTCACTTGATGTACGATGGGCATGACCCACGGCTGTTTGCGCATT
TTGCGGCAGTGGCTCAGCGGCTTGGCGTGTATACGGCACATGACTATGCG
GATATTTTAGAGTTTTTGATTGGACGGTGGGGATTGGAAAAGCTGGAAGG
CTTGACGGGTGAAGGGAGACGTGCACAAGAGTTTGTGTGCGGCTTAGCGC
CTAGGATTAGGCGACTGCAGGAGTTAGCCGATCAGCGAGCCAAGAAGCTG
AAGCCGCCTCTCGTTAAGTTTAGCTGGATTTTTAATAGGGAACTCAGCCT
GTAAAAATTAAAATTAAAAACCCCAAA
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