CK938569
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_YEAST (Replication factor A protein 1 OS=Saccharomyces cerevisiae GN=RFA1 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20 Identity = 52/151 (34.44%), Postives = 85/151 (56.29%), Query Frame = 2 Query: 5 TFIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454 +F+K +F Y AC + CNKKV Q W+C++C+ ++RY+L I D+T W+T F + +++LG A L LK E D F +I +S N+Y FR++ +E+ + D+ R++ TV +NY +E+ YL D +SK+ Sbjct: 474 SFLKVDNFAYPAC----SNENCNKKVLEQPDGTWRCEKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLKEE--DPNEFTKITQSIQMNEYDFRIRAREDTYNDQSRIRYTVANLHSLNYRAEADYLADELSKA 618
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_DANRE (Replication protein A 70 kDa DNA-binding subunit OS=Danio rerio GN=rpa1 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18 Identity = 51/149 (34.23%), Postives = 83/149 (55.70%), Query Frame = 2 Query: 8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISK 451 +I+ + Y ACP + CNKKV Q ++C++C++E + YR +L A I D WVT FQ++ E +LG + L LK ++ F E+ + FN ++FR ++K E + DE R+K+TV+ A V++ S+ L+ I K Sbjct: 455 YIRKENCLYQACP----SKDCNKKVVDQQNGMFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDTAETLLGQNSSYLGQLKD--TNEAAFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRK 597
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_SCHPO (Replication factor A protein 1 OS=Schizosaccharomyces pombe GN=ssb1 PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18 Identity = 46/149 (30.87%), Postives = 79/149 (53.02%), Query Frame = 2 Query: 8 FIKSYSFCYTACPLMIGDRQCNKKVTQSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454 +I+ + Y ACP CNKKV G W+C++CN+E D YRY++ + D TG W+ F + G+ I+ A EL L + D+ F + + Y+F+ + K++ E RV+ TV+ +Q+++ ES+ L++ I + Sbjct: 466 YIRKKNVSYPACPAA----DCNKKVFDQGGSWRCEKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDL--QENDENAFMNCMAEACYMPYIFQCRAKQDNFKGEMRVRYTVMSINQMDWKEESKRLINFIESA 608
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_MOUSE (Replication protein A 70 kDa DNA-binding subunit OS=Mus musculus GN=Rpa1 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18 Identity = 50/150 (33.33%), Postives = 82/150 (54.67%), Query Frame = 2 Query: 8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454 F++ + Y ACP + CNKKV Q ++C++C++E YR +L A I D WVT FQES E ILG +Y+ + + +++ F E+ ++ F + FR+++K E + DE R+K TV+ V++ R L+ I K+ Sbjct: 479 FLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAILG--QNTMYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDFRDYGRRLIANIRKN 622
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_XENLA (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus laevis GN=rpa1 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18 Identity = 52/149 (34.90%), Postives = 79/149 (53.02%), Query Frame = 2 Query: 8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISK 451 +++ + Y ACP + CNKKV Q ++C++CN+E YR +L A I D W+T FQES E ILG A L LK +++ + E+ ++ F Y FR ++K E + DE R+K T + V++ SR L+ I K Sbjct: 461 YLRKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKE--KNEQAYDEVFQNANFRSYTFRARVKLETYNDESRIKATAVDVKPVDHKEYSRRLIMNIRK 603
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_CHICK (Replication protein A 70 kDa DNA-binding subunit OS=Gallus gallus GN=RPA1 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18 Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 2 Query: 32 YTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454 Y ACP + CNKKV Q ++C++C++E YR +L I D WVT FQES E ILG A L LK +++ F E+ ++ FN Y F++++K E + DE R+K T + VNY S+ L+ I ++ Sbjct: 475 YQACP----SQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMMLLVTIADSLDYQWVTCFQESAEFILGQSATFLGELKD--KNEQAFEEVFQNANFNTYEFKIRVKLETYNDESRIKATALDVKPVNYREYSKRLIASIRRN 610
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_XENTR (Replication protein A 70 kDa DNA-binding subunit OS=Xenopus tropicalis GN=rpa1 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17 Identity = 51/149 (34.23%), Postives = 80/149 (53.69%), Query Frame = 2 Query: 8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISK 451 +++ + Y ACP + CNKKV Q ++C++C++E YR +L A I D W+T FQES E ILG A L LK +++ + E+ ++ F Y FR+++K E + DE R+K T + V++ SR L+ I K Sbjct: 461 YLRKENCLYQACP----SQDCNKKVIDQQNGLFRCEKCDKEFPNYKYRLILSANIADFGENQWITCFQESAESILGQNATYLGELKE--KNEQAYDEVFQNANFRSYTFRIRVKLETYNDESRIKATAMDVKPVDHKEYSRRLIMNIRK 603
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_PONAB (Replication protein A 70 kDa DNA-binding subunit OS=Pongo abelii GN=RPA1 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17 Identity = 52/150 (34.67%), Postives = 80/150 (53.33%), Query Frame = 2 Query: 8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454 +++ + Y ACP + CNKKV Q ++C++C+ E YR +L I D WVT FQES E ILG A L LK +++ F E+ ++ F ++FR+++K E + DE R+K TV+ V+Y R L+ I +S Sbjct: 470 YLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_HUMAN (Replication protein A 70 kDa DNA-binding subunit OS=Homo sapiens GN=RPA1 PE=1 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17 Identity = 52/150 (34.67%), Postives = 80/150 (53.33%), Query Frame = 2 Query: 8 FIKSYSFCYTACPLMIGDRQCNKKVT-QSGNRWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRVFNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLLDLISKS 454 +++ + Y ACP + CNKKV Q ++C++C+ E YR +L I D WVT FQES E ILG A L LK +++ F E+ ++ F ++FR+++K E + DE R+K TV+ V+Y R L+ I +S Sbjct: 470 YLRKENCMYQACPT----QDCNKKVIDQQNGLYRCEKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELKD--KNEQAFEEVFQNANFRSFIFRVRVKVETYNDESRIKATVMDVKPVDYREYGRRLVMSIRRS 613
BLAST of CK938569 vs. ExPASy Swiss-Prot
Match: RFA1_DROME (Replication protein A 70 kDa DNA-binding subunit OS=Drosophila melanogaster GN=RpA-70 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15 Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 2 Query: 11 IKSYSFCYTACPLMIGDRQCNKKVTQSGN-RWQCDRCNQEIDECDYRYLLQAQIQDQTGLTWVTAFQESGEEILGCPAKELYMLKYELQDDVRFGEIIRSRV-FNQYLFRLKIKEELHGDEQRVKITVIRADQVNYSSESRYLL 436 +K + Y ACP CNKKV GN +++C++CN YR L+ I D T WV++F E GE++LG ++E + L++D E I S + F ++F+L+ K E++GD R K+TV +N+ +++LL Sbjct: 454 VKQENAFYRACP----QSDCNKKVVDEGNDQFRCEKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQE---VGEALENDPAKAEQIFSALNFTSHIFKLRCKNEVYGDMTRNKLTVQSVAPINHKEYNKHLL 590 The following BLAST results are available for this feature:
BLAST of CK938569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK938569 ID=CK938569; Name=CK938569; organism=Citrus sinensis; type=EST; length=720bpback to top |