CN187730

Overview
NameCN187730
Unique NameCN187730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length463
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:34..496. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_NICPL (Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 6.973e-57
Identity = 103/142 (72.54%), Postives = 117/142 (82.39%), Query Frame = 1
Query:   37 MALRSLATRKAIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            MALR+L +R+ +  G      LRGLQT +LPDLPYDY ALEPAISG+IMQLHHQ HHQ YVTNYNKA+EQL  A++K D  TV +L  AIKFNGGGH+NHSIFWKNLAPV EGGGEPP  SLGWAIDT+FGSLEAL+QKM+A
Sbjct:    1 MALRTLVSRRTLATGLGFRQQLRGLQTFSLPDLPYDYGALEPAISGDIMQLHHQNHHQTYVTNYNKALEQLHDAISKGDAPTVAKLHSAIKFNGGGHINHSIFWKNLAPVREGGGEPPKGSLGWAIDTNFGSLEALVQKMNA 142          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PRUPE (Superoxide dismutase [Mn], mitochondrial OS=Prunus persica GN=SOD PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 2.650e-56
Identity = 102/142 (71.83%), Postives = 117/142 (82.39%), Query Frame = 1
Query:   37 MALRSLATRKAIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            MALR+L +R+ +  G      LRGLQT +LPDLPY+Y ALEPAISG+IMQLHHQ HHQ YVTNYNKA+EQL  A++K D  TV +L  AIKFNGGGH+NHSIFWKNLAPV EGGGEPP  SLGWAIDT+FGSLEAL+QKM+A
Sbjct:    1 MALRTLVSRRTLATGLGFRQQLRGLQTFSLPDLPYNYGALEPAISGDIMQLHHQNHHQTYVTNYNKALEQLHDAISKGDAPTVAKLHSAIKFNGGGHINHSIFWKNLAPVREGGGEPPKGSLGWAIDTNFGSLEALVQKMNA 142          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_HEVBR (Superoxide dismutase [Mn], mitochondrial OS=Hevea brasiliensis GN=SODA PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 3.461e-56
Identity = 109/145 (75.17%), Postives = 119/145 (82.07%), Query Frame = 1
Query:   37 MALRSLATRKAI--GLGKSVGLG-LRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            MALRSL TRK +      + GLG LRGLQT +LPDLPYDY ALEPAISGEIMQLHHQKHHQ Y+TNYNKA+EQL  A+ K D++ VV+LQ AIKFNGGGHVNHSIFWKNLAPV EGGGE PH SLGWAID  FGSLE LIQ M+A
Sbjct:    1 MALRSLVTRKNLPSAFKAATGLGQLRGLQTFSLPDLPYDYGALEPAISGEIMQLHHQKHHQTYITNYNKALEQLNDAIEKGDSAAVVKLQSAIKFNGGGHVNHSIFWKNLAPVREGGGELPHGSLGWAIDADFGSLEKLIQLMNA 145          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_ARATH (Superoxide dismutase [Mn], mitochondrial OS=Arabidopsis thaliana GN=SODA PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 5.903e-56
Identity = 107/145 (73.79%), Postives = 119/145 (82.07%), Query Frame = 1
Query:   37 MALRSLATRKAIGLGKSVG---LGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            MA+R +A+RK +   K      L +RG+QT TLPDLPYDY ALEPAISGEIMQ+HHQKHHQAYVTNYN A+EQL QA+NK D STVV+LQ AIKFNGGGHVNHSIFWKNLAP  EGGGEPP  SLG AID HFGSLE L++KMSA
Sbjct:    1 MAIRCVASRKTLAGLKETSSRLLRIRGIQTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVNKGDASTVVKLQSAIKFNGGGHVNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEGLVKKMSA 145          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_PEA (Superoxide dismutase [Mn], mitochondrial OS=Pisum sativum GN=SODA PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 2.100e-53
Identity = 103/154 (66.88%), Postives = 116/154 (75.32%), Query Frame = 1
Query:   37 MALRSLATRKAIGL-----GKSVGLGL-------RGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            MA R+L  RK +        K +G  +       RGL   TLPDL YDY ALEP ISGEIMQ+HHQKHHQ Y+TNYNKA+EQL  A+ K DTST V+LQ AIKFNGGGH+NHSIFWKNLAPV EGGGEPP  SLGWAIDT+FGSLEALIQK++A
Sbjct:    1 MAARTLLCRKTLSSVLRNDAKPIGAAIAAASTQSRGLHVFTLPDLAYDYGALEPVISGEIMQIHHQKHHQTYITNYNKALEQLHDAVAKADTSTTVKLQNAIKFNGGGHINHSIFWKNLAPVSEGGGEPPKESLGWAIDTNFGSLEALIQKINA 154          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_CAPAN (Superoxide dismutase [Mn], mitochondrial OS=Capsicum annuum GN=SODA PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.361e-52
Identity = 99/142 (69.72%), Postives = 115/142 (80.99%), Query Frame = 1
Query:   37 MALRSLATRKAIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            MALR+L T+K      +    LR +QT +LPDL YDY ALEPAISGEIMQLHHQKHHQ Y+TNYN A++QL  A+NK D+ TV +LQGAIKFNGGGH+NHS+FWKNLAP  EGGGEPP  SLG AIDT+FGSLEA+IQKM+A
Sbjct:    1 MALRNLMTKKPFAGILTFRQQLRCVQTFSLPDLSYDYGALEPAISGEIMQLHHQKHHQTYITNYNNALQQLHDAINKGDSPTVAKLQGAIKFNGGGHINHSVFWKNLAPTREGGGEPPKGSLGSAIDTNFGSLEAVIQKMNA 142          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM1_MAIZE (Superoxide dismutase [Mn] 3.1, mitochondrial OS=Zea mays GN=SODA.4 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 3.032e-52
Identity = 100/149 (67.11%), Postives = 116/149 (77.85%), Query Frame = 1
Query:   37 MALRSLATRKAI-----GLGK--SVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            MALR+LA++K +     G G+  +     RG+ TVTLPDL YD+ ALEPAISGEIM+LHHQKHH  YV NYNKA+EQL  A++K D S VVQLQ AIKFNGGGHVNHSIFWKNL P+ EGGGEPPH  LGWAID  FGS EAL++KM+A
Sbjct:    1 MALRTLASKKVLSFPFGGAGRPLAAAASARGVTTVTLPDLSYDFGALEPAISGEIMRLHHQKHHATYVANYNKALEQLETAVSKGDASAVVQLQAAIKFNGGGHVNHSIFWKNLKPISEGGGEPPHGKLGWAIDEDFGSFEALVKKMNA 149          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM_ORYSJ (Superoxide dismutase [Mn], mitochondrial OS=Oryza sativa subsp. japonica GN=SODA PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 1.152e-51
Identity = 98/145 (67.59%), Postives = 111/145 (76.55%), Query Frame = 1
Query:   37 MALRSLATRK---AIGLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            MALR+LA+RK   A  L  +     RG+ TV LPDLPYDY ALEPAISGEIM+LHHQKHH  YV NYNKA+EQL  A+ K D   +V LQ AIKFNGGGHVNHSIFW NL P+ EGGG+PPH+ LGWAID  FGS EAL++KMSA
Sbjct:    1 MALRTLASRKTLAAAALPLAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAVAKGDAPAIVHLQSAIKFNGGGHVNHSIFWNNLKPISEGGGDPPHAKLGWAIDEDFGSFEALVKKMSA 145          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM4_MAIZE (Superoxide dismutase [Mn] 3.4, mitochondrial OS=Zea mays GN=SODA.3 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.152e-51
Identity = 98/147 (66.67%), Postives = 113/147 (76.87%), Query Frame = 1
Query:   37 MALRSLATRKAI-----GLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            MALR+LA++ A+     G  +      RG+ TV LPDL YD+ ALEPAISGEIM+LHHQKHH  YV NYNKA+EQL  A+ K D S VVQLQGAIKFNGGGHVNHSIFWKNL P+ EGGGEPPH  LGWAID  FGS EAL+++M+A
Sbjct:    1 MALRTLASKNALSFALGGAARPSAASARGVTTVALPDLSYDFGALEPAISGEIMRLHHQKHHATYVGNYNKALEQLDAAVAKGDASAVVQLQGAIKFNGGGHVNHSIFWKNLKPISEGGGEPPHGKLGWAIDEDFGSFEALVKRMNA 147          
BLAST of CN187730 vs. ExPASy Swiss-Prot
Match: SODM3_MAIZE (Superoxide dismutase [Mn] 3.3, mitochondrial OS=Zea mays GN=SODA.2 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.408e-49
Identity = 94/147 (63.95%), Postives = 111/147 (75.51%), Query Frame = 1
Query:   37 MALRSLATRKAI-----GLGKSVGLGLRGLQTVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFNGGGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSA 462
            MALR+LA++ A+     G  +      RG+ TV LPDL YD+ ALEP ISGEIM+LHHQK+H  YV NYNKA+EQ+   + K D S VVQLQGAIKFNGGGHVNHSIFWKNL P+ EGGGEPPH  LGWAID  FGS EAL+++M+A
Sbjct:    1 MALRTLASKNALSFALGGAARPSAESARGVTTVALPDLSYDFGALEPVISGEIMRLHHQKNHATYVVNYNKALEQIDDVVVKGDDSAVVQLQGAIKFNGGGHVNHSIFWKNLKPISEGGGEPPHGKLGWAIDEDFGSFEALVKRMNA 147          
The following BLAST results are available for this feature:
BLAST of CN187730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
SODM_NICPL6.973e-5772.54Superoxide dismutase [Mn], mitochondrial OS=Nicoti... [more]
SODM_PRUPE2.650e-5671.83Superoxide dismutase [Mn], mitochondrial OS=Prunus... [more]
SODM_HEVBR3.461e-5675.17Superoxide dismutase [Mn], mitochondrial OS=Hevea ... [more]
SODM_ARATH5.903e-5673.79Superoxide dismutase [Mn], mitochondrial OS=Arabid... [more]
SODM_PEA2.100e-5366.88Superoxide dismutase [Mn], mitochondrial OS=Pisum ... [more]
SODM_CAPAN1.361e-5269.72Superoxide dismutase [Mn], mitochondrial OS=Capsic... [more]
SODM1_MAIZE3.032e-5267.11Superoxide dismutase [Mn] 3.1, mitochondrial OS=Ze... [more]
SODM_ORYSJ1.152e-5167.59Superoxide dismutase [Mn], mitochondrial OS=Oryza ... [more]
SODM4_MAIZE1.152e-5166.67Superoxide dismutase [Mn] 3.4, mitochondrial OS=Ze... [more]
SODM3_MAIZE1.408e-4963.95Superoxide dismutase [Mn] 3.3, mitochondrial OS=Ze... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0004O17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004O17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187730 ID=CN187730; Name=CN187730; organism=Citrus sinensis; type=EST; length=463bp
ATTGAACGATCAAGAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTTC
GCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGGC
TACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAGC
GCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGAA
GCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTTT
TTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGGC
GCTATCAAGTTCAACGGCGGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTG
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