CK937617

Overview
NameCK937617
Unique NameCK937617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.973e-69
Identity = 127/203 (62.56%), Postives = 160/203 (78.82%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHV-IPMVNETQGD--KPLKKSVRETQEEVTRHWKRFVKGRRAGAC 603
            ELVFHINYLGSDQPTFTLNFSKGS QIIAQYYQ IRLGFEGYKN+M+NC+ NA+ L EG+ K GRF+I+SKDVGVP+VAFSL+DSS +TVFE+SE LR+FGWIVPAYTMP +AE++AVLRVV+REDFS SL ERL+S IE++L E+++ P R+ TK   V    V + +GD          ETQ+++ +HW++    + +G C
Sbjct:  300 ELVFHINYLGSDQPTFTLNFSKGSYQIIAQYYQLIRLGFEGYKNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKKTSGVC 502          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 5.072e-69
Identity = 128/196 (65.31%), Postives = 157/196 (80.10%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRR 591
            EL+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG+EGYKN+MENC  NA  LREGLEKTGRF I+SK++GVPLVAFSLKD+  H  FEISE LR+FGWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+VL E+++LP+RV+ K A V        G +  KK+  E Q E+   WK+FV+ ++
Sbjct:  299 ELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLA-VAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKK 493          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 6.855e-66
Identity = 128/205 (62.44%), Postives = 159/205 (77.56%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDK---PLKKSVRETQEEVTRHWKRFVKGRR--AGAC 603
            EL+FHINYLG+DQPTFTLNFSKGSSQ+IAQYYQ IRLG EGY+N+MENC  N   LREGLEKT RF I+SKD GVPLVAFSLKDSS HT FEIS+ LR++GWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+V++E++ LPSRV  K + +    +E+  D     +KKS  + Q ++   WK+FV  R+  +G C
Sbjct:  299 ELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKIS-LGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRKKTSGIC 502          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.169e-65
Identity = 128/202 (63.37%), Postives = 158/202 (78.22%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRRA--GAC 603
            EL+FHINYLG+DQPTFTLNFSKGSSQIIAQYYQ IRLGFEGYKN+MENC+ N   L+EG+EKT RF I+SKD GVP+VAFSLKD S H  FEISE LR+FGWIVPAYTMPA+A+++ VLRVV+REDFSR+L ERL++ I +VL E+++LPS++S K    I  + E   +K ++K   E   EV   W++FVK R+   G C
Sbjct:  298 ELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKISKKMG--IEGIAENVKEKKMEK---EILMEVIVGWRKFVKERKKMNGVC 494          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.651e-27
Identity = 58/145 (40.00%), Postives = 91/145 (62.76%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 432
            EL+F ++YLG + PT  +NFS  +SQ+I QYY F+R GF+GYK I E     A  L E +EKTG FEI++    +P+V + LK++S     ++++++ L   GW VPAY +P N EN  + R+V+R DF  ++    +  ++E +
Sbjct:  299 ELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMYLAEEIEKTGMFEIMNDGAQLPIVCYKLKENSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAI 443          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.272e-27
Identity = 57/148 (38.51%), Postives = 92/148 (62.16%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 441
            EL+F ++YLG + PT  +NFS  +SQ+I QYY F+R GF+GYK I E     A  L + +EKTG FEI++    +P+V + LK+ S     ++++++ L   GW VPAY +P N EN  + R+V+R DF  ++    +  ++E ++ +
Sbjct:  299 ELIFKVSYLGGELPTMAINFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMFLAKEIEKTGMFEIMNDGSQLPIVCYKLKEDSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAIEAL 446          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.192e-27
Identity = 56/150 (37.33%), Postives = 92/150 (61.33%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 447
            EL+F ++YLG + PT  +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +E+TG F+I +    +P+V + LKD +    T++++++ L+  GW VPAY +P N EN+ + R V R D   ++ E  I   +  ++E+ +
Sbjct:  297 ELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDDANVKWTLYDLADRLQMRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN 446          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.113e-26
Identity = 55/150 (36.67%), Postives = 92/150 (61.33%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 447
            EL+F ++YLG + PT  +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +E+TG F+I +    +P+V + LKD +    T++++++ L+  GW VPAY +P + EN+ + R V R D   ++ E  I   +  ++E+ +
Sbjct:  297 ELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIFNDGSHLPIVCYKLKDDANVNWTLYDLADRLQMRGWQVPAYPLPKSLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN 446          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.935e-26
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 444
            EL+F ++YLG   PT  +NFS+ +SQII QYY F+R GFEGY+ I E     A  L + +EK+G FEI++    +P+V + LKD      T++++++ L   GW VPAY +PA+  +  + R V R D   ++ E   +   + L  +E
Sbjct:  300 ELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEKSGYFEIINDGSNLPIVCYKLKDDLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADALHNLE 448          
BLAST of CK937617 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 6.935e-26
Identity = 60/164 (36.59%), Postives = 95/164 (57.93%), Query Frame = 1
Query:    4 ELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES---LPSRVSTKTAH 480
            ELVF ++YLG   PT  +NFS+ +SQII QYY F+R G+EGY+ I       A  L + + +TG FEI +    +P+V + LKD +  A T++++++ L+  GW VPAY +P    N  + R V R D  +++V    + + E ++E+ +   L   V+T   H
Sbjct:  295 ELVFDVSYLGGHMPTMAINFSRSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAVAETGLFEIYNDGANLPIVCYKLKDDANVAWTLYDLADRLQMKGWQVPAYPLPKEMGNTIIQRYVCRGDLGQNMVTAFKNDLSESIEELNNAHILYHDVNTSKTH 458          
The following BLAST results are available for this feature:
BLAST of CK937617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_SOLLC2.973e-6962.56Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE_PETHY5.072e-6965.31Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE1_ARATH6.855e-6662.44Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH1.169e-6563.37Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_LACLM1.651e-2740.00Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA6.272e-2738.51Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEB_LISIN8.192e-2737.33Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEB_LISMO3.113e-2636.67Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEC_LISIN6.935e-2638.26Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEA_LISMO6.935e-2636.59Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004778_C03 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0003_IIF_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK937617 ID=CK937617; Name=CK937617; organism=Citrus sinensis; type=EST; length=808bp
GGGGAACTTGTCTTTCACATCAACTACCTTGGATCTGATCAACCGACTTT
CACCCTCAACTTCTCAAAAGGCTCCAGTCAAATAATTGCTCAATATTATC
AGTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTATGGAAAATTGC
ATGGGGAATGCTAGAGCGCTAAGAGAAGGATTAGAGAAAACAGGGCGCTT
TGAAATTCTCTCCAAGGATGTTGGCGTACCCTTAGTAGCCTTTTCTTTGA
AGGACAGCAGCGCACACACCGTGTTTGAGATATCCGAGGGTTTGAGAAAG
TTTGGGTGGATAGTTCCGGCCTATACAATGCCTGCTAATGCTGAAAATGT
GGCGGTTCTTCGGGTGGTTGTCAGGGAGGATTTCAGCCGTAGCTTGGTGG
AAAGACTCATCTCACACATCGAGGAAGTTTTGAAGGAAATTGAATCGCTT
CCAAGTCGTGTATCCACAAAAACTGCCCATGTCATACCCATGGTCAACGA
AACTCAGGGTGATAAGCCACTTAAGAAGAGTGTGAGGGAGACTCAGGAGG
AAGTCACCAGGCACTGGAAGAGGTTCGTGAAAGGCCGGAGAGCTGGAGCA
TGCTGAGGTTCCAAACATAAGATGAGACAAGATTTGTATGCTTGTTTGAA
TATTAAAGCTATTGCTTCTTCCTGTTTTCTGTATATTCGTACTTGAAGGT
GTGTTTACTTTATGTGATTGTTGAAGCCTATTTATGTTTTCTTGCACGCT
TGTGAAGTGGCAAATAGAGGTATATGCTTATTGCAAAAAAAAAAAAAAAA
AAAAAAAA
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