CX675335

Overview
NameCX675335
Unique NameCX675335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4640 contig Csv1_Contig4640:583..1479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675335 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 375.941 bits (964), Expect = 1.663e-103
Identity = 173/224 (77.23%), Postives = 198/224 (88.39%), Query Frame = -3
Query:  221 YMQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 892
            +M+ N+ELQEGDMSKALVAL     SIP PKLKN+SRLRTEHQVYELPDSH LL GM+KREPDDP  YLLAIWTPGETANS QPPE +C  +  GKMC ++TC  CNS+RE+  Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLKPI+VPR+W+W+LPRRTVYFGTS+ SIF+GL+TE IQ CFW+G+VCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct: 1759 HMERNMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKL 1982          
BLAST of CX675335 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 367.851 bits (943), Expect = 4.528e-101
Identity = 172/223 (77.13%), Postives = 196/223 (87.89%), Query Frame = -3
Query:  221 MQENLELQEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 889
            M+ N ELQ+G+MS ALVALTA  AS+P PKLKN+S+LRTEH+VYELPD HPLL  +EKREPDDP  YLLAIWTPGETA+SIQP  S C  Q +G +CDE+TCFSCNS++E+  QIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADH SSL PINVPRE +W LPRRTVYFGTS+P+IFKGL+TE IQ CFW+GYVCVRGFD+K+R P+PL+ARLHFPASKL
Sbjct: 1163 MEHNKELQDGNMSSALVALTAETASLPMPKLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQANGMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPINVPRELIWELPRRTVYFGTSVPTIFKGLSTEKIQACFWKGYVCVRGFDRKTRGPKPLIARLHFPASKL 1385          
BLAST of CX675335 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.741e-60
Identity = 114/189 (60.32%), Postives = 136/189 (71.96%), Query Frame = -3
Query:  305 QEGDMSKALVALTAGAASIPAPKLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQE-HGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRG 868
            +E   S  LV L+  AA+IP  KLK   +LRTEH V+ELPD H +L G E+RE +D   YLLAIWTPGET NSIQPP+ RC+  E +  +C+E  CF CN  RE E Q VRGTILIPCRTAMRG FPLNGTYFQ NEVFADHDSS+ PI+VP E +W+L RR  Y G+S+ SI KGL+ E I++ F  G
Sbjct: 1085 KEAGTSHDLVVLSTYAAAIPRRKLKIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEG 1273          
BLAST of CX675335 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 2.969e-60
Identity = 117/212 (55.19%), Postives = 147/212 (69.34%), Query Frame = -3
Query:  233 DMSKALVALTAGAASIPAP---KLKNVSRLRTEHQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFP 859
            ++SKALV  T   A IP     K+K  +RLRTEH VY LPD+H LL   E+R+ DDP  YLLAIW PGET++S  PP+ +CSS +  K+C  K C  C ++RE    I RGTILIPCRTAMRG+FPLNGTYFQ NEVFADH++SL PI   RE    L +R +Y G+++ SIFK L T  I+ CFW G++C+R FD+K R P+ L+ RLH P
Sbjct:  820 EISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSSSFVPPKKKCSS-DGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRIELCFWTGFLCLRAFDRKQRDPKELVRRLHTP 1030          
The following BLAST results are available for this feature:
BLAST of CX675335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DME_ARATH1.663e-10377.23Transcriptional activator DEMETER OS=Arabidopsis t... [more]
ROS1_ARATH4.528e-10177.13Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
DML2_ARATH1.741e-6060.32DEMETER-like protein 2 OS=Arabidopsis thaliana GN=... [more]
DML3_ARATH2.969e-6055.19DEMETER-like protein 3 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_61E08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-61E08-J15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675335 ID=CX675335; Name=CX675335; organism=Citrus sinensis; type=EST; length=897bp
TTTTTTTTTTTTTTTTTAGAAGAATTGCTCAAATTTGAGCACGCCATTAG
GTAACTATAGACTTTTTAAATCATGAACATGCTACAAGCACCCATAGGGT
GAGAAAATTTGGCAAGTTTTTAACGGTGAGCCACTAGCTGTTGGTCATTC
TCTCCATACATAGAAACATTGGCATTGACGTCTACTTATGATCTGCATCT
GCTTTACCTGGTACCTTGTTCAACTTGCTTGCTGGGAAATGCAGTCTCGC
CATCAGAGGACGGGGTGCTCGTGATTTTTGGTCAAATCCCCTCACACAAA
CATATCCTCTCCAGAAGCAGTGCTGAATTCCTTCTGTTGTTAAACCTTTA
AATATTGAAGGTATAGAGGTTCCAAAATACACAGTCCGCCTAGGTAGGTT
CCATAACCACTCCCTGGGAACATTAATGGGCTTCAAGCTAGAATCATGGT
CTGCAAATACCTCATTAACTTGGAAATATGTGCCATTTAGGGGAAAGCTT
CCTCTCATTGCTGTTCGACACGGTATCAAAATGGTCCCTCGAACAATTTG
AAACTCTGATTCCCGAACACTGTTGCATGAAAAACATGTCTTCTCATCGC
ACATTTTGCCATGCTCTTGAGAACTGCACCTACTTTCAGGTGGTTGTATA
GAATTTGCCGTTTCACCTGGTGTCCATATGGCAAGAAGATATCTGCCTGG
GTCATCAGGTTCTCTTTTTTCCATCCCACGCAAAAGAGGGTGTGAATCTG
GAAGTTCATACACTTGGTGTTCTGTTCGTAGACGACTCACATTCTTAAGC
TTGGGTGCAGGAATAGATGCTGCTCCCGCTGTTAAAGCAACTAAAGCTTT
GGACATATCACCTTCTTGAAGCTCCAAATTCTCTTGCATATAATTCT
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