CN187086

Overview
NameCN187086
Unique NameCN187086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN187086 vs. ExPASy Swiss-Prot
Match: NFYA7_ARATH (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.357e-31
Identity = 78/158 (49.37%), Postives = 96/158 (60.76%), Query Frame = 2
Query:  218 MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHXXXXXXXXXXXXXXRSIFXXXXXXXXXXXXXXXXXMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRPSRAKAESENKVLKSRKPYLHESRHLPAL 691
            MTSS+H++SDN  + E+++  +S  Q   P+   ++ SI T  V       G  +              RSIF                  VHLQLMG+QQ GVPLP+DAVEEPVFVNAKQYHGILRRR SRA+ ES+NKV+KSRKPYLHESRHL A+
Sbjct:    1 MTSSIHELSDNIGSHEKQEQRDSHFQPPIPS-ARNYESIVTSLVY---SDPGTTNSMAPGQYPYPDPYYRSIFAPPPQPYTG---------VHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAI 145          
BLAST of CN187086 vs. ExPASy Swiss-Prot
Match: NFYA4_ARATH (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 73/158 (46.20%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  218 MTSSVHDMSDNSDADEQRKHPESQLQSSTPAMGMSHPSITTPNVQYATHQVGAGHXXXXXXXXXXXXXXRSIFXXXXXXXXXXXXXXXXXMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRPSRAKAESENKVLKSRKPYLHESRHLPAL 691
            MTSSVH++SDN+++  +++ P+SQ +   P+ G S  SI T +V       G                 RS+F                  V LQLMG+QQ GVPL  DAVEEPVFVNAKQYHGILRRR SRAK E+ N+ +K++KPY+HESRHL A+
Sbjct:    1 MTSSVHELSDNNESHAKKERPDSQTRPQVPS-GRSSESIDTNSVYSEPMAHGL--------YPYPDPYYRSVFAQQAYLPHPYPG------VQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAI 143          
BLAST of CN187086 vs. ExPASy Swiss-Prot
Match: NFYA5_ARATH (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.084e-18
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 2
Query:  494 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRPSRAKAESENKVLKSRKPYLHESRHLPAL 691
            HL++MG+  + VPLP    E EP+FVNAKQYH ILRRR  RAK E++NK++K RKPYLHESRHL AL
Sbjct:  157 HLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHAL 223          
BLAST of CN187086 vs. ExPASy Swiss-Prot
Match: NFYA8_ARATH (Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.510e-16
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:  515 QQAGVPLPTDAVE-EPVFVNAKQYHGILRRRPSRAKAESENKVLKSRKPYLHESRHLPAL 691
            Q   VPLP D +E EPVFVNAKQ+H I+RRR  RAK E++NK++K+RKPYLHESRH+ AL
Sbjct:  158 QMTRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHAL 217          
BLAST of CN187086 vs. ExPASy Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.110e-15
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 2
Query:  509 GIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRPSRAKAESENKVLKSRKPYLHESRHLPAL 691
            G+  + +PLP +  +EPVFVNAKQY  ILRRR +RAKAE E K++KSRKPYLHESRH  A+
Sbjct:  151 GMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAM 211          
BLAST of CN187086 vs. ExPASy Swiss-Prot
Match: NFYA6_ARATH (Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.474e-15
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 2
Query:  494 HLQLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRPSRAKAESENKVLKSRKPYLHESRHLPAL 691
            H Q+ G+  + +PLP +  E EP+FVNAKQY  ILRRR  RAK E++NK++K RKPYLHESRHL AL
Sbjct:  150 HPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHAL 216          
BLAST of CN187086 vs. ExPASy Swiss-Prot
Match: NFYA3_ARATH (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 2
Query:  500 QLMGIQQAGVPLPTDAVE-EPVFVNAKQYHGILRRRPSRAKAESENKVLKSRKPYLHESRHLPAL 691
            Q++ +    VPLP +  E +PVFVNAKQYH I+RRR  RAK E++NK++++RKPYLHESRH+ AL
Sbjct:  160 QMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHAL 224          
BLAST of CN187086 vs. ExPASy Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 2
Query:  506 MGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRPSRAKAESENKVLKSRKPYLHESRHLPAL 691
            +G+ +    LP D  +EPV+VNAKQY GILRRR +RAKAE E KV++ RKPYLHESRH  A+
Sbjct:  156 LGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAM 217          
BLAST of CN187086 vs. ExPASy Swiss-Prot
Match: NFYA_RAT (Nuclear transcription factor Y subunit alpha OS=Rattus norvegicus GN=Nfya PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  527 VPLPTDAV--EEPVFVNAKQYHGILRRRPSRAKAESENKVLKSRKPYLHESRHLPAL 691
            +PLP   +  EEP++VNAKQYH IL+RR +RAK E+E K+ K R+ YLHESRH  A+
Sbjct:  246 IPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAM 302          
BLAST of CN187086 vs. ExPASy Swiss-Prot
Match: NFYA_MOUSE (Nuclear transcription factor Y subunit alpha OS=Mus musculus GN=Nfya PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 2
Query:  527 VPLPTDAV--EEPVFVNAKQYHGILRRRPSRAKAESENKVLKSRKPYLHESRHLPAL 691
            +PLP   +  EEP++VNAKQYH IL+RR +RAK E+E K+ K R+ YLHESRH  A+
Sbjct:  251 IPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAM 307          
The following BLAST results are available for this feature:
BLAST of CN187086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NFYA7_ARATH9.357e-3149.37Nuclear transcription factor Y subunit A-7 OS=Arab... [more]
NFYA4_ARATH4.346e-2846.20Nuclear transcription factor Y subunit A-4 OS=Arab... [more]
NFYA5_ARATH9.084e-1865.67Nuclear transcription factor Y subunit A-5 OS=Arab... [more]
NFYA8_ARATH6.510e-1666.67Nuclear transcription factor Y subunit A-8 OS=Arab... [more]
NFYA9_ARATH1.110e-1563.93Nuclear transcription factor Y subunit A-9 OS=Arab... [more]
NFYA6_ARATH2.474e-1561.19Nuclear transcription factor Y subunit A-6 OS=Arab... [more]
NFYA3_ARATH4.220e-1558.46Nuclear transcription factor Y subunit A-3 OS=Arab... [more]
NFYA1_ARATH4.220e-1561.29Nuclear transcription factor Y subunit A-1 OS=Arab... [more]
NFYA_RAT4.828e-1157.89Nuclear transcription factor Y subunit alpha OS=Ra... [more]
NFYA_MOUSE4.828e-1157.89Nuclear transcription factor Y subunit alpha OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003O15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187086 ID=CN187086; Name=CN187086; organism=Citrus sinensis; type=EST; length=691bp
ATGCGTTAAAGTAGGGAGAGGGAGTACCAATAAGATTAGTAATATAGGAA
GGCAGTGAGAGTAGGGCTGTAAAAGAGAAAATCGAAAATTGACGTTTTTA
TAATTTCACTTTCACCTGCAGAGCAGCAGAGGAGAGCCAGAAACAGCCTG
CTATAGAACACAGTGCCTAGTTTCTCTATAAGATTTGAGTTGCAGATTCT
ATATGCGTGACGGCCTCATGACTTCCTCTGTGCATGATATGTCCGATAAC
AGTGACGCTGATGAGCAGCGGAAGCATCCAGAATCCCAGTTACAGTCCTC
AACACCTGCAATGGGAATGTCTCATCCAAGCATCACAACTCCCAATGTTC
AATATGCAACGCATCAAGTCGGGGCAGGCCATGCTATGGCACCAGCAGCT
TACCCCTATCCAGATCCGTACTACAGAAGCATATTTGCTCCCTATGATGC
ACAACCATATCCTCCACAGCCATATGGTGGACAACCAATGGTCCATCTTC
AGTTGATGGGAATTCAGCAAGCTGGAGTTCCTTTGCCAACAGATGCAGTT
GAGGAGCCCGTGTTTGTCAATGCCAAACAATATCATGGCATCTTGCGACG
ACGACCATCTCGTGCAAAAGCTGAATCTGAAAACAAAGTTTTAAAGTCTC
GAAAGCCATACTTGCATGAATCTCGACATCTGCCTGCATTA
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