CN187015

Overview
NameCN187015
Unique NameCN187015
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN187015 vs. ExPASy Swiss-Prot
Match: VPS16_DICDI (Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 41/84 (48.81%), Postives = 60/84 (71.43%), Query Frame = -1 
Query:  442 RAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLADPRERAEAYARIG 693
            + A  +++EFKV +KR++W+K+ AL+   DW+ L +FSKEK+ PIGY PFVE C+D   + EALKYIPK+ D   + + Y +IG
Sbjct:  706 KKAQSIRSEFKVPDKRFWWIKIKALSIMNDWEELMKFSKEKKSPIGYEPFVEVCLDQKNQIEALKYIPKITDILPKIQFYIQIG 789
[Close]
BLAST of CN187015 vs. ExPASy Swiss-Prot
Match: VPS16_MOUSE (Vacuolar protein sorting-associated protein 16 homolog OS=Mus musculus GN=Vps16 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.658e-14
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  442 GNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLADPRERAEAYARIG 702
            G+++ A ++  +F++ +KR +WLK+ ALA   DW+ LE+FSK K+ PIGY PFVE C+    K EA KY  ++  P ++ +A   +G
Sbjct:  707 GHNKRAEQLARDFRIPDKRLWWLKLAALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKHEAKKYASRVG-PEQKVKALLLVG 792
[Close]
BLAST of CN187015 vs. ExPASy Swiss-Prot
Match: VPS16_HUMAN (Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens GN=VPS16 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  442 GNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLADPRERAEAYARIG 702
            G+++ A ++  +F++ +KR +WLK+ ALA   DW+ LE+FSK K+ PIGY PFVE C+    K EA KY  ++  P ++ +A   +G
Sbjct:  707 GHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVG-PEQKVKALLLVG 792
[Close]
BLAST of CN187015 vs. ExPASy Swiss-Prot
Match: VPS16_BOVIN (Vacuolar protein sorting-associated protein 16 homolog OS=Bos taurus GN=VPS16 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = -1 
Query:  442 GNHRAAMKVKTEFKVSEKRWYWLKVFALATKRDWDALERFSKEKRPPIGYRPFVEACVDADEKGEALKYIPKLADPRERAEAYARIG 702
            G ++ A ++  +F++ +KR +WLK+ ALA   DW+ LE+FSK K+ PIGY PFVE C+    K EA KY  ++  P ++ +A   +G
Sbjct:  707 GQNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVG-PEQKVKALLLVG 792
The following BLAST results are available for this feature:
BLAST of CN187015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VPS16_DICDI2.920e-1948.81Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_MOUSE1.658e-1441.38Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_HUMAN2.166e-1441.38Vacuolar protein sorting-associated protein 16 hom... [more]
VPS16_BOVIN2.829e-1441.38Vacuolar protein sorting-associated protein 16 hom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003M17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN187015 ID=CN187015; Name=CN187015; organism=Citrus sinensis; type=EST; length=702bp
TTTTTTTTTTTTTTTTTGTTCCTTAATTGTTATCATTTTATAGTCCAAGC
AAAACAAGGAAAATAATAAGTTTTATGCATTCCCTTCGAGGGGAACGAAA
ATTCAACCTCTCTCATACGAGATAACTTACAAAATAATCGCAAACTATTA
CAATATCACTATCTGCCTTTACACTCATTCAACATGATCTATGCACACAA
CAGACAATAACTTACAATATTTATATATATAACAAAAAATATTTAAAAGA
AAAAAAAAATATTTAAAAGAAAAAAAAATATTGAATTGACAGGGCTAAGA
AACACCTTGGAAGGACAATCTATCTCGAAGAGTATCAAAAATTGATGAAG
CTGCAGCATTTTGTGCAAATGTCAATTTCAATCGACCAAGCAATTCACCA
TCCTTTGCCTGTGAAGCAGCATCAGCAGCTTCTTTGGCCATACCAATCCG
GGCATAAGCCTCAGCTCTTTCTCGAGGATCTGCAAGTTTTGGAATATATT
TGAGTGCTTCACCTTTCTCATCTGCATCTACACATGCTTCGACAAATGGC
CTGTAACCAATTGGTGGTCTCTTCTCCTTCGAGAACCTCTCCAGGGCATC
CCAATCTCTTTTTGTAGCCAAAGCAAAAACTTTAAGCCAATACCATCTCT
TCTCAGAAACCTTGAATTCTGTCTTCACTTTCATGGCAGCTCTATGATTT
CC
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