|
Overview
Name | CX675003 |
Unique Name | CX675003 |
Type | EST |
Organism | Citrus sinensis (Sweet orange) |
Sequence length | 937 |
Analyses
This EST is derived from or has results from the following analyses
Alignments
Feature Name | Type | Location | Analysis |
CX675003_ssr110 |
microsatellite |
CX675003_ssr110:110..125. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
CX675003_ssr681 |
microsatellite |
CX675003_ssr681:681..700. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
CX675003_ssr734 |
microsatellite |
CX675003_ssr734:734..745. |
BLAST: Citrus ESTs to Prunus persica proteins V1 |
Csv1_Contig5466 |
contig |
Csv1_Contig5466:225..1161. |
BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1 |
Homology
BLAST of CX675003 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.459e-12 Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = -1
Query: 422 PKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGII 634
P+LSGLE+SE+ +E S R ++EE RWMF V E EWFVFA+ V G +LS + D T L+ G++
Sbjct: 79 PELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLV 149
The following BLAST results are available for this feature:
Properties
Property Name | Value |
Genbank description | UCRCS08_59A09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59A09-A17-1-6.b, mRNA sequence. |
Sequences
The
following sequences are available for this feature:
EST sequence >CX675003 ID=CX675003; Name=CX675003; organism=Citrus sinensis; type=EST; length=937bp TTTTTTTTAAAGACGTATTCTATTAATCGACAGCTGATAGAGAAGTTCAT TAAATATAAAAGGAAAATGTACACTGCTTAAATAATATTATAAATACGAA ATTAAGAGCCATGCATGCATGCATGGAGAGATGCAATTACTACTCGATCT TCTTCTCCTTGATCTCCTCTTTGTCTTTGGTGACAAACTTGCTCTTCAAT TTCTTAATTACCTTCTCATCGACCTCCTCGTAAAATCTCCTTGATTTCGC CTTCGCCGTCTCCCCACATCTCTTTATTTTATCCCCATTTTTTCATATAT CACAGGAACCGTCATCCCCATCACAATTCCTGCAAGAAACGCAATTTTAT AGTTCATTAACAGTTGCATGTGATTGTGAGAAAAGATGTGCACATAAGAG TTTCTTTCTTTTGATGCACTAAATAATACCCGTGTAAAGGAGAGTAAGAA GATCAGAAAATGTGGCCACATAGGAGAGCACTAGCAATCCAGCAACTGCT TGAGCAAAAACAAACCACTCTTTCTCAACACTCACATGAAACATCCATCT TGTAAATTCCTCAACCACTCCTCTAAAGGAATTCGCAACCTCCAAAGCTG ACTTCTCAGAAATCTCCAATCCCGACAACTTCGGTGGTTCTCTATATAAA TATAGAAAGACCAATTATGTAGTAACTAATTAAATAAATAAATAAATAAA AGGAAATATATAAATAATAAAAAGATGACTAATTAAATAAATAAAAGGAA ATATATAAAAAAGACGACTAATTAATCAAAAGGGTGATCAAAATTTATAT CTTATGTATATCACGAGCTACTAGCTACGGATCGTACTTGCCAAGAAGTC TCATAATGTTTCCAGAGAGAAAGGTGAAAGAAACAATGGACATGGCAAGC CACGAAGCCACAGTGAGGAAGTAAAATGATAGACCTC back to top
|