CN186422
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2) HSP 1 Score: 189.119 bits (479), Expect = 1.965e-47 Identity = 99/121 (81.82%), Postives = 105/121 (86.78%), Query Frame = -3 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATG-NDDGGIDSDLQARLDNLRR 514 +KGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMV+EVMGDAIDDAL GD+ +LV+QVLDEIGIDINQELVNAPS VA PA K KV QAEATG D GGIDSDLQARLDNLR+ Sbjct: 104 MKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRK 224
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24 Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = -3 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAM MNRQ+ LP +QKIM EFERQ+E M+M E+M DAIDDA+ +D +V+QVLDE+G+ ++ EL N P++ + GK A+ + T D D+DL+ RL+NLRR Sbjct: 103 MKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNLPATGGSLSVAAGKKAEPQPTLAD---ADADLEERLNNLRR 219
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24 Identity = 61/120 (50.83%), Postives = 80/120 (66.67%), Query Frame = -3 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAMG MNRQ+ LP +QKIM EFERQ E M+M E+M DAIDDA+ ++ +V+QVLDE+G+ + EL N P ST + +V +AEAT + D+DL+ RL NLRR Sbjct: 103 MKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP-STGGSLSVAAGGKKAEATASALADADADLEERLKNLRR 221
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24 Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = -3 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVA-APAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAMG MNRQ+ LP +QKIM EFERQ E M+M E+M DAIDDA+ ++ +V+QVLDE+G+ + EL N PS+ + + A GK A+A A+ D D+DL+ RL NLRR Sbjct: 103 MKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAEAAASALADA--DADLEERLKNLRR 221
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23 Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = -3 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAM MNRQ+ LP +QKIM EFE+Q+E M+M E+M DAIDDA+ +D +V+QVLDE+G+ + EL N PS+ + K +A A D D+DL+ RL+NLRR Sbjct: 103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEATAALAD---ADADLEERLNNLRR 219
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.282e-22 Identity = 61/123 (49.59%), Postives = 80/123 (65.04%), Query Frame = -3 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPS---STVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAM MNRQ+ LP +QKIM EFE+Q+E M+M E+M DAIDDA+ +D +V+QVLDE+G+ + EL N PS S A A KG+ + A A D+DL+ RL+NLRR Sbjct: 103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEPSAALADA------DADLEERLNNLRR 219
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22 Identity = 57/120 (47.50%), Postives = 77/120 (64.17%), Query Frame = -3 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KGVTKAM MNRQ+ LP +QKIM EFE+Q M+M E+M DAIDDA+ +D +V+QVLDE+G+++ EL P + A +G+ A+A A D D+DL+ RL NLRR Sbjct: 103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELATLPPPGGSLAAGEGRAAEAAAALAD---ADADLEERLKNLRR 219
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18 Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = -3 Query: 233 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKV 514 +KGVTKAM MNRQMNLP KIM EFE+Q++KM+M E+M D +D + D E++NQVLDEIGID+ +LV+AP++ + A K +V Sbjct: 102 MKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDAPTTVGTSVASKHQV 195
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17 Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = -3 Query: 158 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLR 514 ++G TKAM M++ M+ K+M+EF++Q+ +M+M TE+M D+IDDAL D+ +L NQVLDEIGIDI +L +AP KGK+ +A GID +L+ RL LR Sbjct: 102 MQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAP---------KGKIGGKKAEDVGSSGID-ELEKRLAALR 210
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.518e-15 Identity = 42/120 (35.00%), Postives = 69/120 (57.50%), Query Frame = -3 Query: 155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514 +KG TKAM MN+QM K++++F++Q+ +++M E+M +AID+ L D+ +L NQVLDEIG+ + +L +AP +A + A N + +L+ RL +LRR Sbjct: 102 MKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSESSEVDELEKRLASLRR 221 The following BLAST results are available for this feature:
BLAST of CN186422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN186422 ID=CN186422; Name=CN186422; organism=Citrus sinensis; type=EST; length=714bpback to top |