CN186359

Overview
NameCN186359
Unique NameCN186359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.189e-38
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.219e-37
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.219e-37
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.219e-37
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1_ORYSJ (Tubulin alpha-1 chain OS=Oryza sativa subsp. japonica GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.219e-37
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.219e-37
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.079e-37
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISN+TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.079e-37
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISN+TA+AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.715e-37
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPP+VVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
[Close]
BLAST of CN186359 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.547e-37
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 2 
Query:    8 INYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 235
            INYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK
Sbjct:  355 INYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEK 430
The following BLAST results are available for this feature:
BLAST of CN186359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TBA3_ARATH4.189e-38100.00Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA6_MAIZE1.219e-3798.68Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV... [more]
TBA5_MAIZE1.219e-3798.68Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV... [more]
TBA3_ELEIN1.219e-3798.68Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ... [more]
TBA1_ORYSJ1.219e-3798.68Tubulin alpha-1 chain OS=Oryza sativa subsp. japon... [more]
TBA1_HORVU1.219e-3798.68Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ... [more]
TBA1_NAEGR2.079e-3797.37Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]
TBA13_NAEGR2.079e-3797.37Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA1_ARATH2.715e-3797.37Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA_PRUDU3.547e-3797.37Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186359 ID=CN186359; Name=CN186359; organism=Citrus sinensis; type=EST; length=571bp
GCGGTGTATTAACTATCAGCCTCCAACTGTTGTACCTGGAGGTGACCTGG
CCAAGGTTCAGCGAGCTGTTTGCATGATCAGCAACAACACAGCAGTGGCT
GAAGTGTTCTCTCGCATTGATCACAAATTCGATCTCATGTATGCCAAGAG
GGCATTCGTCCACTGGTACGTTGGTGAAGGCATGGAGGAAGGTGAATTCT
CAGAAGCACGTGAAGATCTGGCTGCTCTTGAGAAAGATTATGAGGAAGTT
GGTGCAGAAGGAGTTGATGATGAGGATGATGGTGAAGAATATTGATGTAC
TGCTTCTGCTGTAAACTATGAAGATGAGAAATATGTACATTTTGCAAGGG
CATTTATGTGGAAATTTGTTGAGAAATGTGAGGGTCTGTACTCAATGCTT
AGTCCCTTGCCTTTTTATTGCTTTGTTTCTTTCGTGTAGACTATTTCCTT
TTGCTGTTGAACTCTCAAAATTGTGCCAATATTGTGATTCGTGGTGCTTT
TAATGGTATCAGTGAAGTGATATTTTAGAATTATAAGTTGCATATTGTTT
CTNANAAAAAAAAAAAAAAAA
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