EY665731

Overview
NameEY665731
Unique NameEY665731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665731 vs. ExPASy Swiss-Prot
Match: KDM3B_MOUSE (Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.075e-19
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:   96 PEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIXXXXXXXXXXXXQHSAVERLKKEHRAQDLKENLVQDGMDE 488
            P +LKLKDWPP + F D+MP   ++ +  LP  EY+  R G LNLA +LPS  ++PDLGPK Y AYG+     R    T LH D+SDAVN+                V +   E  A ++ +  + DG ++
Sbjct: 1281 PMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTK-RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVYVGIPVGEGAHDEEVLKTIDEGDADEVTKQRIHDGKEK 1410          
BLAST of EY665731 vs. ExPASy Swiss-Prot
Match: KDM3B_HUMAN (Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.075e-19
Identity = 51/131 (38.93%), Postives = 71/131 (54.20%), Query Frame = 3
Query:   96 PEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIXXXXXXXXXXXXQHSAVERLKKEHRAQDLKENLVQDGMDE 488
            P +LKLKDWPP + F D+MP   ++ +  LP  EY+  R G LNLA +LPS  ++PDLGPK Y AYG+     R    T LH D+SDAVN+                V +   E  A ++ +  + DG ++
Sbjct: 1480 PMVLKLKDWPPGEDFRDMMPTRFEDLMENLPLPEYTK-RDGRLNLASRLPSYFVRPDLGPKMYNAYGLITAEDRRVGTTNLHLDVSDAVNVMVYVGIPIGEGAHDEEVLKTIDEGDADEVTKQRIHDGKEK 1609          
BLAST of EY665731 vs. ExPASy Swiss-Prot
Match: KDM3A_HUMAN (Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 3.450e-18
Identity = 50/120 (41.67%), Postives = 67/120 (55.83%), Query Frame = 3
Query:   42 TRQFFKGYTQGRTYDNFW-----------PEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNI 368
            T +   G T G  +D F            P +LKLKDWPP + F D+MP   D+ ++ +P  EY+  R G LNLA +LP+  ++PDLGPK Y AYG+     R    T LH D+SDA N+
Sbjct: 1011 TNEIITGATVGDFWDGFEDVPNRLKNEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANV 1129          
BLAST of EY665731 vs. ExPASy Swiss-Prot
Match: KDM3A_CHICK (Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.450e-18
Identity = 50/121 (41.32%), Postives = 66/121 (54.55%), Query Frame = 3
Query:   42 TRQFFKGYTQGRTYDNFW------------PEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNI 368
            T +   G T G  +D F             P +LKLKDWPP + F D+MP   D+ +  +P  EY+  R G LNLA +LP+  ++PDLGPK Y AYG+     R    T LH D+SDA N+
Sbjct: 1014 TNEIITGATVGDFWDGFEDISSRLRTEEGEPMVLKLKDWPPGEDFRDMMPSRFDDLMKNIPLPEYTR-RGGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANV 1133          
BLAST of EY665731 vs. ExPASy Swiss-Prot
Match: KDM3A_RAT (Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 3
Query:   42 TRQFFKGYTQGRTYDNFW-------------PEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNI 368
            T +   G T G  +D F              P +LKLKDWPP + F D+MP   D+ ++ +P  EY+  R G LNLA +LP+  ++PDLGPK Y AYG+     R    T LH D+SDA N+
Sbjct:  895 TNEIITGATVGDFWDGFEDVPNRLKNEKEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANV 1015          
BLAST of EY665731 vs. ExPASy Swiss-Prot
Match: KDM3A_MOUSE (Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18
Identity = 50/122 (40.98%), Postives = 67/122 (54.92%), Query Frame = 3
Query:   42 TRQFFKGYTQGRTYDNFW-------------PEMLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNI 368
            T +   G T G  +D F              P +LKLKDWPP + F D+MP   D+ ++ +P  EY+  R G LNLA +LP+  ++PDLGPK Y AYG+     R    T LH D+SDA N+
Sbjct: 1011 TNEIITGATVGDFWDGFEDVPNRLKNDKEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTR-RDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANV 1131          
BLAST of EY665731 vs. ExPASy Swiss-Prot
Match: KD3AA_XENLA (Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-A PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.194e-16
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  102 MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIXXXXXXXXXXXXQHSAVERLKKEHRAQDL 455
            +LKLKDWPP + F D M    ++ ++ +P  EY+  R G LNLA +LP+  ++PDLGPK Y AYG+     R    T LH D+SDA N+            Q   V R  ++  A +L
Sbjct: 1052 VLKLKDWPPGEDFRDTMLSRFEDLMNNIPLPEYTR-REGKLNLAARLPAYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDATNVMVYVGIPKGEHDQEQEVIRTIQDGDADEL 1168          
BLAST of EY665731 vs. ExPASy Swiss-Prot
Match: KD3AB_XENLA (Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.395e-16
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  102 MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNIXXXXXXXXXXXXQHSAVERLKKEHRAQDL 455
            +LKLKDWPP + F D M    ++ ++ +P  EY+  R G LNLA +LP+  ++PDLGPK Y AYG+     R    T LH D+SDA N+            Q   V R  ++  A +L
Sbjct: 1055 VLKLKDWPPGEDFRDTMLSRFEDLMNNIPLPEYTR-REGKLNLAARLPTYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVYVGIPKGEHDQDQEVLRTIQDGDADEL 1171          
BLAST of EY665731 vs. ExPASy Swiss-Prot
Match: JHD2C_HUMAN (Probable JmjC domain-containing histone demethylation protein 2C OS=Homo sapiens GN=JMJD1C PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.794e-14
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  102 MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNI 368
            +LKLKDWP  + F+ +MP   ++ + +LP  EY +P  G  NLA  LP   ++PDLGP+   AYGV          T LH ++SD VNI
Sbjct: 2258 VLKLKDWPSGEDFKTMMPARYEDLLKSLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVVAAKDHDIGTTNLHIEVSDVVNI 2345          
BLAST of EY665731 vs. ExPASy Swiss-Prot
Match: JHD2C_MOUSE (Probable JmjC domain-containing histone demethylation protein 2C OS=Mus musculus GN=Jmjd1c PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.723e-13
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  102 MLKLKDWPPSDKFEDLMPRHCDEFISALPFQEYSDPRAGILNLAVKLPSGVLKPDLGPKTYIAYGVAEELGRGDSVTKLHCDMSDAVNI 368
            +LKLKD P  + F+ +MP   ++F+  LP  EY +P  G  NLA  LP   ++PDLGP+   AYGVA         T LH + SD VN+
Sbjct: 2068 VLKLKDCPSGEDFKAMMPTRYEDFLRCLPLPEYCNPE-GKFNLASHLPGFFVRPDLGPRLCSAYGVAAAKDHDIGTTNLHIEASDVVNV 2155          
The following BLAST results are available for this feature:
BLAST of EY665731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
KDM3B_MOUSE4.075e-1938.93Lysine-specific demethylase 3B OS=Mus musculus GN=... [more]
KDM3B_HUMAN4.075e-1938.93Lysine-specific demethylase 3B OS=Homo sapiens GN=... [more]
KDM3A_HUMAN3.450e-1841.67Lysine-specific demethylase 3A OS=Homo sapiens GN=... [more]
KDM3A_CHICK3.450e-1841.32Lysine-specific demethylase 3A OS=Gallus gallus GN... [more]
KDM3A_RAT5.885e-1840.98Lysine-specific demethylase 3A OS=Rattus norvegicu... [more]
KDM3A_MOUSE5.885e-1840.98Lysine-specific demethylase 3A OS=Mus musculus GN=... [more]
KD3AA_XENLA7.194e-1638.98Lysine-specific demethylase 3A-A OS=Xenopus laevis... [more]
KD3AB_XENLA9.395e-1638.98Lysine-specific demethylase 3A-B OS=Xenopus laevis... [more]
JHD2C_HUMAN8.794e-1442.70Probable JmjC domain-containing histone demethylat... [more]
JHD2C_MOUSE9.723e-1342.70Probable JmjC domain-containing histone demethylat... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-095-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665731 ID=EY665731; Name=EY665731; organism=Citrus sinensis; type=EST; length=865bp
CCCGCGTCCGAAGTTTGTCATAAACACGCGTGTAGATCAGTACTCGACAG
TTTTTTAAAGGTTATACACAAGGGAGAACATATGATAACTTTTGGCCGGA
GATGCTCAAGCTAAAGGACTGGCCTCCATCTGACAAGTTTGAAGATCTTA
TGCCACGCCATTGTGATGAGTTTATAAGTGCATTGCCATTTCAAGAATAC
AGTGATCCTAGGGCAGGTATCTTGAACCTTGCGGTTAAGCTTCCATCTGG
TGTCTTGAAACCGGACTTGGGTCCTAAAACATATATTGCTTATGGAGTTG
CTGAAGAGCTTGGAAGAGGGGACTCTGTAACAAAGCTGCATTGTGACATG
TCAGATGCGGTGAACATTTTGACGCATACAGAAGAAGTGTTGTTAACTGA
AGAGCAGCACTCTGCAGTTGAAAGATTGAAGAAGGAACATAGAGCACAGG
ACCTGAAAGAAAATCTTGTACAGGATGGAATGGATGAAAGCATTGAGGAA
CCCAACAGTGATAATAACAAAAGAAGATACGGGATGTCCTCAGAAATCCA
ATTGGATTCAGAGCTGCTCCCCTCAGGAATTAAAGGAAAAGTCAAAATGT
CCAAAGAATGAAATGCAGGGAACTTGCATTTACTTGTCCCTCTTTCGGAA
GGGAACATGGTGGAATCAGGGGGGGGCTCTGGGGGAACTTTTTAAGAAGG
CGGGATGTTCCCCAGTTAAAAGGTTAACTAAAAAAACCCTTTCTCAAAAA
TCTCAAACCCCTCCTATTGTTCACCACCTAAAAAAAGGGCTTTCCTTCCC
ATTTTTGACCCGGGGTTTTTAATTTAAATTCCCAAAACCACAAAAAAAAT
GATGAAAAAAAAAAT
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