CX043317

Overview
NameCX043317
Unique NameCX043317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2024 contig Csv1_Contig2024:141..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043317 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.337e-23
Identity = 66/136 (48.53%), Postives = 84/136 (61.76%), Query Frame = 3 
Query:   96 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRSMVAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPAPQTAQMTMFYGGQVIAFNDFPADKA 482
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP  + S  D  V+ +      +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +T+FY GQVI FNDF A+KA
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFP-CEASNMDSMVQDV------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKA 146
[Close]
BLAST of CX043317 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.463e-18
Identity = 56/135 (41.48%), Postives = 78/135 (57.78%), Query Frame = 3 
Query:   99 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRSMVAPRNWESMNLFPQQAGFAPKNDTPNMIDSSL-------NKPAPQTAQMTMFYGGQVIAFNDFPADKA 482
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D    S     + +   +FP+Q+ F+  + +    D  +        KP  Q+A +T+FYGG+V+ F+DF A+KA
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFP-CEASGMD----SSAGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKA 139
[Close]
BLAST of CX043317 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.002e-11
Identity = 47/135 (34.81%), Postives = 72/135 (53.33%), Query Frame = 3 
Query:   93 PEKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRSMVA--PRNWESMNLFPQQAGFAPKNDTPNMID-SSLNKPAPQT--AQMTMFYGGQVIAFNDFPADKA 482
            PEKS+FSQ CSLLS+YLKE GSFG++++G++                 + + L    D  GQ   ++ +     R ++ +  F          D    ID S   K AP++  +Q+T+F+GG+V+ FN+FP DKA
Sbjct:    7 PEKSNFSQRCSLLSRYLKEKGSFGNINMGLARK---------------SDLELAGKFDLKGQQNVIKKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMVFNEFPEDKA 126
The following BLAST results are available for this feature:
BLAST of CX043317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TI10A_ARATH4.337e-2348.53Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH2.463e-1841.48Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH1.002e-1134.81Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_10C07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10C07-F14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043317 ID=CX043317; Name=CX043317; organism=Citrus sinensis; type=EST; length=487bp
GCACTAGTTTTATTTTTGCTCGTGGGTTTCCGCTTCTGAGTTGGTTAAAC
ACAACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACTTGCCGGAGAA
ATCAAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTACTTGAAAGAGG
GAGGTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAACATTGAAGCT
AATGGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAACTATGAATTT
GTTTCCGGTAAGTGACAACTCTGGACAAGATGTTTCAGTTCGAAGCATGG
TGGCTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCAGCAAGCTGGT
TTTGCTCCGAAGAATGATACCCCTAACATGATAGATTCAAGTTTAAACAA
GCCCGCGCCGCAAACTGCTCAAATGACTATGTTTTATGGCGGACAAGTGA
TTGCGTTCAATGATTTTCCTGCTGATAAAGCAAATGA
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