CX674750

Overview
NameCX674750
Unique NameCX674750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674750 vs. ExPASy Swiss-Prot
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.233e-31
Identity = 60/80 (75.00%), Postives = 74/80 (92.50%), Query Frame = -1
Query:  462 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 701
            DPNKPKRP SAFFVFMEEFR+ + K+HP+NK+V+AVGKA G KWK+MS+A+KAPYVAK+EKRKVEYEK+M+ YN++QAEG
Sbjct:   40 DPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEG 119          
BLAST of CX674750 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.425e-28
Identity = 55/80 (68.75%), Postives = 70/80 (87.50%), Query Frame = -1
Query:  462 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEG 701
            DPNKPKRP SAFFVFME+FR+ YK+ HP NKSVA VGKAGG+KWK ++ A+KAP+++KAEKRK EYEK+++ YN++QA G
Sbjct:   32 DPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAG 111          
BLAST of CX674750 vs. ExPASy Swiss-Prot
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.275e-26
Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = -1
Query:  474 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 701
            DPNKPKRP SAFFVFM +FREQYKKDHP NKSVAAVGKA GE+WKS+SE +KAPYV +A K+K EYE  ++ YN++
Sbjct:   41 DPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116          
BLAST of CX674750 vs. ExPASy Swiss-Prot
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.069e-26
Identity = 54/82 (65.85%), Postives = 68/82 (82.93%), Query Frame = -1
Query:  456 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQAEGTK 701
            DPNKPKR  SAFFVFMEEFR+++K+ +PKNKSVAAVGKA G++WKS+SE+DKAPYVAKA K K+EY K +  YN+ ++   K
Sbjct:   37 DPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAK 118          
BLAST of CX674750 vs. ExPASy Swiss-Prot
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.248e-24
Identity = 53/78 (67.95%), Postives = 65/78 (83.33%), Query Frame = -1
Query:  468 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRRQA 701
            DPNKPKR  SAFFVFM EFRE++K+ +PKNKSVAAVGKA GE+WKS+SE++KAPYVAKA K K EY K +  YN+ ++
Sbjct:   38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGES 115          
BLAST of CX674750 vs. ExPASy Swiss-Prot
Match: HMGT_ONCMY (High mobility group-T protein OS=Oncorhynchus mykiss PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.885e-13
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  474 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 701
            DPN PKRP+SAFF+F  +FR Q K + P   S+  V K  GEKW +++  DK PY  KA + K +YEKD+  Y  +
Sbjct:   90 DPNAPKRPSSAFFIFCADFRPQVKGETP-GLSIGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNK 164          
BLAST of CX674750 vs. ExPASy Swiss-Prot
Match: HMGB3_MOUSE (High mobility group protein B3 OS=Mus musculus GN=Hmgb3 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.921e-13
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  474 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 701
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++S+ +K PYV KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSK 163          
BLAST of CX674750 vs. ExPASy Swiss-Prot
Match: HMGB3_HUMAN (High mobility group protein B3 OS=Homo sapiens GN=HMGB3 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  474 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 701
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++++++K PY+ KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSK 163          
BLAST of CX674750 vs. ExPASy Swiss-Prot
Match: HMGB3_BOVIN (High mobility group protein B3 OS=Bos taurus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 6.427e-13
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -1
Query:  474 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 701
            DPN PKRP S FF+F  EFR + K  +P   S+  V K  GE W ++S+++K PY+ KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSGFFLFCSEFRPKIKSANP-GISIGDVAKKLGEMWNNLSDSEKQPYINKAAKLKEKYEKDVADYKSK 163          
BLAST of CX674750 vs. ExPASy Swiss-Prot
Match: HMGB3_CHICK (High mobility group protein B3 OS=Gallus gallus GN=HMGB3 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.096e-12
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = -1
Query:  474 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGEKWKSMSEADKAPYVAKAEKRKVEYEKDMKNYNRR 701
            DPN PKRP SAFF+F  EFR + K  +P   S+  V K  GE W ++S+ +K PY  KA K K +YEKD+ +Y  +
Sbjct:   89 DPNAPKRPPSAFFLFCSEFRPKIKSTNP-GISIGDVAKKLGEMWNNLSDGEKQPYNNKAAKLKEKYEKDVADYKSK 163          
The following BLAST results are available for this feature:
BLAST of CX674750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HMGL_SOYBN5.233e-3175.00HMG1/2-like protein OS=Glycine max PE=2 SV=1[more]
HMGL_IPONI1.425e-2868.75HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
HMGL_VICFA2.275e-2672.37HMG1/2-like protein OS=Vicia faba PE=2 SV=1[more]
MNB1B_MAIZE5.069e-2665.85DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=... [more]
HMGL_WHEAT1.248e-2467.95HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1[more]
HMGT_ONCMY2.885e-1347.37High mobility group-T protein OS=Oncorhynchus myki... [more]
HMGB3_MOUSE4.921e-1347.37High mobility group protein B3 OS=Mus musculus GN=... [more]
HMGB3_HUMAN6.427e-1344.74High mobility group protein B3 OS=Homo sapiens GN=... [more]
HMGB3_BOVIN6.427e-1346.05High mobility group protein B3 OS=Bos taurus GN=HM... [more]
HMGB3_CHICK1.096e-1247.37High mobility group protein B3 OS=Gallus gallus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_8E01_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-8E01-J2-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674750 ID=CX674750; Name=CX674750; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTAACTAATTTCCTTAGCATTACAAAAGATAAGAA
AAAACCATCACCACCATTCATCATCAAAAAACATGGGATTTTTCTACAAA
CGATGGAACGCCTTAGCTAAATCATTAAGCTTTAGAACACAGTACATATA
GAGCAGTGAATCTCCCACCTACAGCTATTAATTCTTTGAAAGGCAGGCAT
AAGAAAATGTCGAGGGAGAAGCAACATGATTCTCTTACATGATGATGAAG
ATGATGAAAGCATCCAAAAAAATTAACATGGAAGCACAAAGCATTAACAT
ATGTTGTTTGAAACATTGTCACAGCCTAACATGACTATGCTAATTTCTTC
CTTCAACTTCTATTCATCATCATCCTCCTCGCCACTGCCTTCTTCATCAT
CATCCTCATCATTCACCTCTGACATAGACTTCTCAGACTCCTCTTCTTCC
TCCGGCTTAGTTCCCTCCGCCTGTCTCCTATTGTAGTTTTTCATATCCTT
CTCATACTCAACCTTGCGCTTCTCTGCCTTAGCAACATACGGTGCTTTAT
CAGCTTCAGACATTGACTTCCATTTCTCACCACCAGCTTTACCAACAGCA
GCAACTGATTTGTTCTTAGGATGATCCTTCTTGTATTGTTCACGGAATTC
TTCCATGAAAACAAAGAAGGCGCTGGCTGGCCTCTTTGGCTTGTTCGGGT
CCTTAGCTGCCTTTCCCGATTTTCGTCCAGCTTTGGCAGGCTTCTTGTTC
ACAGAGAGCTTGGCGTTTCTGGTGTCTGACTTTGACCT
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