CX674608

Overview
NameCX674608
Unique NameCX674608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length786
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX674608_ssr72 microsatellite CX674608_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5428 contig Csv1_Contig5428:1..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            VV+LRGLP++C+  D+  F +   I D +     +  + GR SGEAFV       V+ AL++DR++MG RY+EVF+  R +    +   + + G           P+ A   ND         +++RGLPF   K EIVQFF   +I+ + I +   P+GK T
Sbjct:   12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152          

HSP 2 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 540
            VRLRGLPF CT  +I +FF+GL+IV     L V+  G+ +GEAFV FA     E AL + ++ +G RY+EVF+  +++
Sbjct:  113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            VV+LRGLP++C+  D+  F +   I D +     +  + GR SGEAFV       V+ AL++DR++MG RY+EVF+  R +    +   + + G           P+ A   ND         +++RGLPF   K EIVQFF   +I+ + I +   P+GK T
Sbjct:   12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152          

HSP 2 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 540
            VRLRGLPF CT  +I +FF+GL+IV     L V+  G+ +GEAFV FA     E AL + ++ +G RY+EVF+  +++
Sbjct:  113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            VV+LRGLP++C+  D+  F +   I D       +  + GR SGEAFV       V+ AL++DR++MG RY+EVF+  R +    +   + + G           P+ A   ND         +++RGLPF   K EIVQFF   +I+ + I +   P+GK T
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152          

HSP 2 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 540
            VRLRGLPF CT  +I +FF+GL+IV     L V+  G+ +GEAFV FA     E AL + ++ +G RY+EVF+  +++
Sbjct:  113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16
Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            VV+LRGLP++C+  D+  F +   I D       +  + GR SGEAFV       V+ AL++DR++MG RY+EVF+  R +    +   + + G           P+ A   ND         +++RGLPF   K EIVQFF   +I+ + I +   P+GK T
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152          

HSP 2 Score: 75.485 bits (184), Expect = 3.768e-13
Identity = 60/218 (27.52%), Postives = 89/218 (40.83%), Query Frame = 1
Query:  316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE----GIYDNDFHGSPPPSRAK------------------------RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            VRLRGLPF CT  +I +FF+GL+IV     L V+  G+ +GEAFV FA     E AL + ++ +G RY+EVF+  +++                            Y  +  +   E    G Y   + G    S                           RY D +   Q      + MRGLP+   +++I  FF     +  ++HI   PDG+ T
Sbjct:  113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVT 328          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16
Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            VV+LRGLP++C+  D+  F +   I D +     +  + GR SGEAFV       V+ AL++DR++MG RY+EVF+  R +    +   + + G           P+ A   ND         +++RGLPF   K EI+QFF   +I+ + I +   P+GK T
Sbjct:   12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADTAND-------GFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKIT 152          

HSP 2 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 540
            VRLRGLPF CT  +I +FF+GL+IV     L V+  G+ +GEAFV FA     E AL + ++ +G RY+EVF+  +++
Sbjct:  113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_RAT (Epithelial splicing regulatory protein 1 OS=Rattus norvegicus GN=Esrp1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKAT 786
            VVR RGLP+  +D DI +FF GL+I      L +N  GR +GEA V F      + ALQR + +MG RY+EV++   +D+        N                   ++  K   E+  I++MRGLPF+    E+V FF  +  I   ++ I     PDG+ T
Sbjct:  226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPT 370          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_MOUSE (Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKAT 786
            VVR RGLP+  +D DI +FF GL+I      L +N  GR +GEA V F      + ALQR + +MG RY+EV++   +D+        N                   ++  K   E+  I++MRGLPF+    E+V FF  +  I   ++ I     PDG+ T
Sbjct:  225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPT 369          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_HUMAN (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15
Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 1
Query:  313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKAT 786
            VVR RGLP+  +D DI +FF GL+I      L +N  GR +GEA V F      + ALQR + +MG RY+EV++   +D+        N                   ++  K   E+  I++MRGLPF+    E+V FF  +  I   ++ I     PDG+ T
Sbjct:  226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPT 370          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.866e-15
Identity = 54/167 (32.34%), Postives = 81/167 (48.50%), Query Frame = 1
Query:  316 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            V + G+PF+  + D+ +FF GL +  V LL +  GR +G   V F  P     AL+R+R  M +RYVEV     + +  A    + ++          PPP         S  KR   +   E    + ++GLPF  +   ++ FFK   I+ED I+IA  P+GKAT
Sbjct:  306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471          
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: RBM12_MACMU (RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.530e-14
Identity = 54/167 (32.34%), Postives = 80/167 (47.90%), Query Frame = 1
Query:  316 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786
            V + G+PF+  + D+  FF GL +  V LL +  GR +G   V F  P     AL+R+R  M +RYVEV     + +  A    + ++          PPP         S  KR   +   E    + ++GLPF  +   ++ FFK   I+ED I+IA  P+GKAT
Sbjct:  306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQSHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471          
The following BLAST results are available for this feature:
BLAST of CX674608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HNRPF_RAT3.641e-1634.36Heterogeneous nuclear ribonucleoprotein F OS=Rattu... [more]
HNRPF_MOUSE3.641e-1634.36Heterogeneous nuclear ribonucleoprotein F OS=Mus m... [more]
HNRPF_MACFA3.641e-1634.36Heterogeneous nuclear ribonucleoprotein F OS=Macac... [more]
HNRPF_HUMAN3.641e-1634.36Heterogeneous nuclear ribonucleoprotein F OS=Homo ... [more]
HNRPF_BOVIN4.755e-1633.74Heterogeneous nuclear ribonucleoprotein F OS=Bos t... [more]
ESRP1_RAT4.025e-1533.54Epithelial splicing regulatory protein 1 OS=Rattus... [more]
ESRP1_MOUSE4.025e-1533.54Epithelial splicing regulatory protein 1 OS=Mus mu... [more]
ESRP1_HUMAN4.025e-1533.54Epithelial splicing regulatory protein 1 OS=Homo s... [more]
RBM12_MOUSE6.866e-1532.34RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE... [more]
RBM12_MACMU1.530e-1432.34RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_7E10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-7E10-J19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674608 ID=CX674608; Name=CX674608; organism=Citrus sinensis; type=EST; length=786bp
TTTGAGTTTAGGGTTCTTTTTGTTTTTTGGTCTCTGTACGATCGAGTTTC
CTATTAGGGTTTGTTCTAATTTCATCATCATCAGCAAGATAATCGAAGAA
GCTGAGAAAGAATTGAATTTTCAACAGTAAAAGCTATGTACGGATCCAGA
GGGGCAATATTGGGAAGCGGGGGGGTTTCGGACGGGTACGAGGTCGGCTC
AAAGAGACAAAGAATGATGGAACCAAATCCTTACTTCGCAGTGAGCAGCA
GTGCAAGTGGCTTTCAACCTTACGGCTATGGTGGTGGGTTTCCACCCCCG
CCTTCCTTTCCTGTTGTTCGCCTCAGGGGGCTGCCATTTAACTGCACTGA
TATTGACATTTGCAAGTTCTTTGCTGGACTGGATATTGTGGATGTGTTGC
TGGTCAACAAGAATGGACGCTTCTCAGGAGAGGCTTTTGTTGTCTTTGCT
GGGCCCATACAAGTTGAGTTTGCTTTACAGAGAGATCGGCAGAACATGGG
GCGTCGGTATGTTGAAGTTTTCAGGTGCAAGAGACAGGATTACTACAATG
CCGTGGCTTCAGAGGTGAATTATGAAGGGATCTATGATAATGATTTCCAT
GGAAGTCCTCCACCATCACGAGCTAAGAGGTACAATGATAAAGATCAAAT
GGAACACACTGAAATTTTGAAGATGCGTGGTCTTCCTTTCTCTGTGAAGA
AATCTGAAATAGTTCAATTCTTTAAAGACTACAAGATAATTGAGGATAAG
ATACACATTGCATGCCGACCTGATGGTAAGGCTACC
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