CX674608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRPF_RAT (Heterogeneous nuclear ribonucleoprotein F OS=Rattus norvegicus GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16 Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL++DR++MG RY+EVF+ R + + + + G P+ A ND +++RGLPF K EIVQFF +I+ + I + P+GK T Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152 HSP 2 Score: 70.8626 bits (172), Expect = 9.280e-12 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 540 VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL + ++ +G RY+EVF+ +++ Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRPF_MOUSE (Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus GN=Hnrnpf PE=1 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16 Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL++DR++MG RY+EVF+ R + + + + G P+ A ND +++RGLPF K EIVQFF +I+ + I + P+GK T Sbjct: 12 VVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152 HSP 2 Score: 70.8626 bits (172), Expect = 9.280e-12 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 540 VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL + ++ +G RY+EVF+ +++ Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRPF_MACFA (Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis GN=HNRNPF PE=2 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16 Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL++DR++MG RY+EVF+ R + + + + G P+ A ND +++RGLPF K EIVQFF +I+ + I + P+GK T Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152 HSP 2 Score: 70.8626 bits (172), Expect = 9.280e-12 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 540 VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL + ++ +G RY+EVF+ +++ Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRPF_HUMAN (Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens GN=HNRNPF PE=1 SV=3) HSP 1 Score: 85.5001 bits (210), Expect = 3.641e-16 Identity = 56/163 (34.36%), Postives = 84/163 (51.53%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDV-----LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV+LRGLP++C+ D+ F + I D + + GR SGEAFV V+ AL++DR++MG RY+EVF+ R + + + + G P+ A ND +++RGLPF K EIVQFF +I+ + I + P+GK T Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADSAND-------GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKIT 152 HSP 2 Score: 75.485 bits (184), Expect = 3.768e-13 Identity = 60/218 (27.52%), Postives = 89/218 (40.83%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDY---------------------------YNAVASEVNYE----GIYDNDFHGSPPPSRAK------------------------RYNDKD---QMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL + ++ +G RY+EVF+ +++ Y + + E G Y + G S RY D + Q + MRGLP+ +++I FF + ++HI PDG+ T Sbjct: 113 VRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLNPV--RVHIEIGPDGRVT 328
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: HNRPF_BOVIN (Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus GN=HNRNPF PE=2 SV=3) HSP 1 Score: 85.1149 bits (209), Expect = 4.755e-16 Identity = 55/163 (33.74%), Postives = 85/163 (52.15%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVDVL-----LVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 VV+LRGLP++C+ D+ F + I D + + + GR SGEAFV V+ AL++DR++MG RY+EVF+ R + + + + G P+ A ND +++RGLPF K EI+QFF +I+ + I + P+GK T Sbjct: 12 VVKLRGLPWSCSVEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE----MDWVLKHSG-----------PNSADTAND-------GFVRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKIT 152 HSP 2 Score: 70.8626 bits (172), Expect = 9.280e-12 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQD 540 VRLRGLPF CT +I +FF+GL+IV L V+ G+ +GEAFV FA E AL + ++ +G RY+EVF+ +++ Sbjct: 113 VRLRGLPFGCTKEEIIQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQEE 190
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_RAT (Epithelial splicing regulatory protein 1 OS=Rattus norvegicus GN=Esrp1 PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15 Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKAT 786 VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR + +MG RY+EV++ +D+ N ++ K E+ I++MRGLPF+ E+V FF + I ++ I PDG+ T Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPT 370
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_MOUSE (Epithelial splicing regulatory protein 1 OS=Mus musculus GN=Esrp1 PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15 Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKAT 786 VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR + +MG RY+EV++ +D+ N ++ K E+ I++MRGLPF+ E+V FF + I ++ I PDG+ T Sbjct: 225 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPT 369
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: ESRP1_HUMAN (Epithelial splicing regulatory protein 1 OS=Homo sapiens GN=ESRP1 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 4.025e-15 Identity = 55/164 (33.54%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 313 VVRLRGLPFNCTDIDICKFFAGLDIVD---VLLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPPSRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKII---EDKIHIACRPDGKAT 786 VVR RGLP+ +D DI +FF GL+I L +N GR +GEA V F + ALQR + +MG RY+EV++ +D+ N ++ K E+ I++MRGLPF+ E+V FF + I ++ I PDG+ T Sbjct: 226 VVRARGLPWQSSDQDIARFFKGLNIAKGGAALCLNAQGRRNGEALVRFVSEEHRDLALQRHKHHMGTRYIEVYKATGEDFLKIAGGTSN----------------EVAQFLSK---ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPT 370
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: RBM12_MOUSE (RNA-binding protein 12 OS=Mus musculus GN=Rbm12 PE=1 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 6.866e-15 Identity = 54/167 (32.34%), Postives = 81/167 (48.50%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 V + G+PF+ + D+ +FF GL + V LL + GR +G V F P AL+R+R M +RYVEV + + A + ++ PPP S KR + E + ++GLPF + ++ FFK I+ED I+IA P+GKAT Sbjct: 306 VSVHGMPFSAMENDVREFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV-AAGGHITFKQSMGPSGQAHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471
BLAST of CX674608 vs. ExPASy Swiss-Prot
Match: RBM12_MACMU (RNA-binding protein 12 OS=Macaca mulatta GN=RBM12 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.530e-14 Identity = 54/167 (32.34%), Postives = 80/167 (47.90%), Query Frame = 1 Query: 316 VRLRGLPFNCTDIDICKFFAGLDIVDV-LLVNKNGRFSGEAFVVFAGPIQVEFALQRDRQNMGRRYVEVFRCKRQDYYNAVASEVNYEGIYDNDFHGSPPP---------SRAKRYNDKDQMEHTEILKMRGLPFSVKKSEIVQFFKDYKIIEDKIHIACRPDGKAT 786 V + G+PF+ + D+ FF GL + V LL + GR +G V F P AL+R+R M +RYVEV + + A + ++ PPP S KR + E + ++GLPF + ++ FFK I+ED I+IA P+GKAT Sbjct: 306 VSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATERQWV-AAGGHITFKQNMGPSGQSHPPPQTLPRSKSPSGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT 471 The following BLAST results are available for this feature:
BLAST of CX674608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
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Sequences
The
following sequences are available for this feature:
EST sequence >CX674608 ID=CX674608; Name=CX674608; organism=Citrus sinensis; type=EST; length=786bpback to top |