CV886715

Overview
NameCV886715
Unique NameCV886715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV886715_ssr117 microsatellite CV886715_ssr117:117..128. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_SOLLC (40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 64/72 (88.89%), Postives = 72/72 (100.00%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 373
            VNNMVLFD++TYDKLLSEAPK+KLITPS+LSDRLRI+GSLAR+AI+DLMARGSIRM+SAHASQQIYTRATNT
Sbjct:   37 VNNMVLFDKSTYDKLLSEAPKYKLITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS253_ARATH (40S ribosomal protein S25-3 OS=Arabidopsis thaliana GN=RPS25D PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.545e-29
Identity = 64/71 (90.14%), Postives = 71/71 (100.00%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 370
            VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAI++LMA+G+IRM+SAH+SQQIYTRAT+
Sbjct:   37 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS254_ARATH (40S ribosomal protein S25-4 OS=Arabidopsis thaliana GN=RPS25E PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.018e-29
Identity = 63/72 (87.50%), Postives = 71/72 (98.61%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 373
            VNNMVLFDQATYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IRM++AH+SQQIYTRATNT
Sbjct:   37 VNNMVLFDQATYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS252_ARATH (40S ribosomal protein S25-2 OS=Arabidopsis thaliana GN=RPS25B PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.635e-29
Identity = 63/72 (87.50%), Postives = 70/72 (97.22%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 373
            VNNMVLFDQ TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAI++LMA+G IRM+SAH+SQQIYTRATNT
Sbjct:   37 VNNMVLFDQGTYDKLLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS251_ARATH (40S ribosomal protein S25-1 OS=Arabidopsis thaliana GN=RPS25A PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.466e-27
Identity = 60/70 (85.71%), Postives = 67/70 (95.71%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            VNNMVLFDQATYDKL+SEAPKFKLITPSILSDRLRINGSLAR+AI+DLM +G+IRM+S H+SQQI TRAT
Sbjct:   36 VNNMVLFDQATYDKLMSEAPKFKLITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 105          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_AMACR (40S ribosomal protein S25 OS=Amaranthus cruentus GN=RPS25 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.814e-20
Identity = 47/71 (66.20%), Postives = 62/71 (87.32%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 370
            VNN+VLFD AT+DKLLSEA K K++T + LS+R RINGSLARRAI++L++RG+I+M+  H+S QIYTR+TN
Sbjct:   36 VNNLVLFDNATFDKLLSEAGKQKVVTAATLSERFRINGSLARRAIRELVSRGAIKMVCHHSSLQIYTRSTN 106          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_BRABE (40S ribosomal protein S25 OS=Branchiostoma belcheri GN=RPS25 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.449e-19
Identity = 47/83 (56.63%), Postives = 66/83 (79.52%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT-NT*MRITLSSLH 403
            +NN+VLFD+ATYDKL  E P +KLITPS++S+RL+I GSLAR A+K+L ++G I+++S H++Q IYTRAT +T  +I L   H
Sbjct:   40 LNNLVLFDKATYDKLYKEVPSYKLITPSVVSERLKIRGSLARAALKELHSKGMIKLVSKHSAQVIYTRATKDTDSKIVLRRGH 122          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_SHEEP (40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 40/70 (57.14%), Postives = 59/70 (84.29%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            +NN+VLFD+ATYDKL  E P +KLITP+++S+RL+I GSLAR A+++L+++G I+++S H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_RAT (40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 40/70 (57.14%), Postives = 59/70 (84.29%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            +NN+VLFD+ATYDKL  E P +KLITP+++S+RL+I GSLAR A+++L+++G I+++S H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
BLAST of CV886715 vs. ExPASy Swiss-Prot
Match: RS25_MOUSE (40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 40/70 (57.14%), Postives = 59/70 (84.29%), Query Frame = 2
Query:  158 VNNMVLFDQATYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 367
            +NN+VLFD+ATYDKL  E P +KLITP+++S+RL+I GSLAR A+++L+++G I+++S H +Q IYTR T
Sbjct:   44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNT 113          
The following BLAST results are available for this feature:
BLAST of CV886715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RS25_SOLLC5.310e-3088.8940S ribosomal protein S25 OS=Solanum lycopersicum ... [more]
RS253_ARATH1.545e-2990.1440S ribosomal protein S25-3 OS=Arabidopsis thalian... [more]
RS254_ARATH2.018e-2987.5040S ribosomal protein S25-4 OS=Arabidopsis thalian... [more]
RS252_ARATH2.635e-2987.5040S ribosomal protein S25-2 OS=Arabidopsis thalian... [more]
RS251_ARATH2.466e-2785.7140S ribosomal protein S25-1 OS=Arabidopsis thalian... [more]
RS25_AMACR3.814e-2066.2040S ribosomal protein S25 OS=Amaranthus cruentus G... [more]
RS25_BRABE1.449e-1956.6340S ribosomal protein S25 OS=Branchiostoma belcher... [more]
RS25_SHEEP4.662e-1857.1440S ribosomal protein S25 OS=Ovis aries GN=RPS25 P... [more]
RS25_RAT4.662e-1857.1440S ribosomal protein S25 OS=Rattus norvegicus GN=... [more]
RS25_MOUSE4.662e-1857.1440S ribosomal protein S25 OS=Mus musculus GN=Rps25... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_024G09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_024_T3_G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886715 ID=CV886715; Name=CV886715; organism=Citrus sinensis; type=EST; length=643bp
ATCTGCTCTTCTCTCCGAAACCTTTACTGCATTTCCATCAAGCAGCACAA
TGGCACCGAAGAAGGATAAGGCCCCACCTCCGGCCTCAAAGCCAGCAAAG
TCTGGTGGAGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAA
GGAGAAGGTGAACAATATGGTTTTGTTCGACCAGGCAACCTATGATAAGC
TTCTTTCTGAGGCCCCCAAGTTTAAGCTTATTACTCCTTCAATCCTATCT
GACAGACTGAGGATAAATGGATCATTGGCACGTCGGGCTATCAAGGATTT
GATGGCAAGAGGTTCCATCCGGATGATATCAGCTCATGCTAGCCAGCAGA
TTTACACCAGAGCCACCAATACCTAGATGAGGATAACCCTTTCATCACTC
CATGGATAGATAGATTGTTTCTGCTCTGTTTCAGGGAACTAGTGCTTAGA
ACCTTTTTGGTACTTTGTGCCTGAAATTTTGTTTCTTATGCTTTTTGATA
TTCTTGATGATAGACAGAAATTTTTTATGTTAGTGAAATCAATTAATGGT
TTTTTTTTTTTACCCCTTTCGGTTACAATTAAAGATGTTGAAACAAAGGT
TATTTGGTGAGAAATATTCAATATTTACTTTGCTTCCTATTAA
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